C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028437 Ubap1 10090 + 4:41348996-41390525 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072866 Ubap1-001 41348996-41390525 protein_coding
  ENSMUST00000108060 Ubap1-002 41348996-41389766 protein_coding
  ENSMUST00000132235 Ubap1-004 41371725-41388692 protein_coding
  ENSMUST00000136705 Ubap1-005 41349048-41371285 processed_transcript
  ENSMUST00000154529 Ubap1-003 41371248-41379416 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072866ENSMUST00000108060ENSMUST00000132235ENSMUST00000136705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072866 17.486±1.27 16.089±1.26 2.799±0.00 1.870±0.17 13.502±4.72 13.930±5.87 4.782±1.25 15.926±1.05 9.427±2.96 10.237±3.83 5.056±0.98 13.841±6.28 6.975±3.06 17.774±8.61
ENSMUST00000108060 3.610±0.53 N/A 10.579±2.54 10.468±5.68 4.691±1.48 5.605±0.39 5.759±1.53 6.886±0.80 6.640±3.28 2.728±0.30 6.028±1.45 8.202±3.07 14.153±3.68 7.323±1.94
ENSMUST00000132235 N/A N/A N/A 24.462±0.00 N/A N/A N/A N/A N/A N/A N/A 27.428±0.00 54.625±16.73 32.445±0.00
ENSMUST00000136705 N/A 34.261±7.93 N/A N/A N/A N/A N/A N/A 25.526±4.48 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004U CIL_00004U_0002 CGP 4:41291300-41390525
CIL_0005IT CIL_0005IT_0002 CGP 4:41348996-41464887

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000813 ISS ESCRT I complex
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0015031 IEA protein transport
GO:0043130 ISS ubiquitin binding
GO:0043162 ISS ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058746 ubap1 ubiquitin associated protein 1 protein_coding Danio_rerio
ENSG00000165006 UBAP1 ubiquitin associated protein 1 protein_coding Homo_sapiens

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