C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359544 UBAP1-002 ENSG00000165006 9606 + 9:34220439-34252522 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaENST00000359544
Transcript ID Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta
ENST00000359544 6.408±0.00 0.944±0.00 2.626±0.00 4.615±0.00 5.331±0.76 3.728±2.82 10.388±0.00 7.361±0.00 5.231±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004U CIL_00004U_0001 CGP 9:34086387-34252523
CIL_0005IT CIL_0005IT_0001 CGP 9:34179013-34329200

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000813 IDA ESCRT I complex
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0015031 IEA protein transport
GO:0043130 IDA ubiquitin binding
GO:0043162 IMP ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072866 Ubap1-001 protein_coding Mus_musculus 0 2503
ENSMUST00000108060 Ubap1-002 protein_coding Mus_musculus 0 1463
ENSMUST00000154529 Ubap1-003 processed_transcript Mus_musculus 0 782
ENSMUST00000132235 Ubap1-004 protein_coding Mus_musculus 0 412
ENSMUST00000136705 Ubap1-005 processed_transcript Mus_musculus 0.00000002 66

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