C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, matrin-type 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165061 ZMAT4 9606 - 8:40530590-40897833 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000297737 ZMAT4-002 40530594-40897825 protein_coding
  ENST00000315769 ZMAT4-001 40530590-40897833 protein_coding
  ENST00000518242 ZMAT4-008 40696996-40786782 retained_intron
  ENST00000519406 ZMAT4-003 40581204-40888545 protein_coding
  ENST00000519806 ZMAT4-009 40674364-40697337 retained_intron
  ENST00000522623 ZMAT4-006 40767646-40897807 nonsense_mediated_decay
  ENST00000523188 ZMAT4-007 40697270-40897824 nonsense_mediated_decay
  ENST00000523542 ZMAT4-005 40697274-40897810 nonsense_mediated_decay
  ENST00000523823 ZMAT4-004 40808523-40884944 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000297737ENST00000315769ENST00000519406ENST00000519806
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000297737 N/A N/A N/A 5.281±2.92 N/A 0.342±0.00 N/A N/A N/A 0.309±0.00 0.063±0.00 0.603±0.00
ENST00000315769 0.039±0.00 0.045±0.00 0.121±0.00 N/A 0.033±0.00 0.056±0.00 0.050±0.00 0.005±0.00 0.061±0.00 N/A 0.202±0.00 N/A
ENST00000519406 N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519806 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.112±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YQ CIL_0003YQ_0002 CGP 8:40153455-40897833
CIL_0003YP CIL_0003YP_0002 CGP 8:40530590-41309497

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061419 zmat4b zinc finger, matrin type 4b protein_coding Danio_rerio
ENSDARG00000092987 zmat4a zinc finger, matrin type 4a protein_coding Danio_rerio
ENSMUSG00000037492 Zmat4 zinc finger, matrin type 4 protein_coding Mus_musculus

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