C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, matrin type 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037492 Zmat4 10090 + 8:23636019-24156585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042352 Zmat4-001 23669658-24063105 protein_coding
  ENSMUST00000123412 Zmat4-002 23669658-24156585 nonsense_mediated_decay
  ENSMUST00000131410 Zmat4-003 23636019-23902111 protein_coding
  ENSMUST00000135747 Zmat4-004 23700821-23797401 protein_coding
  ENSMUST00000146774 Zmat4-005 23929053-24015192 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042352ENSMUST00000123412ENSMUST00000131410ENSMUST00000135747ENSMUST00000146774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042352 0.065±0.06 0.071±0.01 0.060±0.00 4.316±2.12 0.117±0.04 0.100±0.05 0.056±0.02 0.074±0.04 0.009±0.01 0.544±0.10 0.077±0.04 0.134±0.07 0.487±0.40 0.036±0.02
ENSMUST00000123412 N/A 0.187±0.08 N/A N/A 0.249±0.10 0.091±0.02 N/A 0.242±0.00 N/A N/A N/A 0.118±0.06 N/A N/A
ENSMUST00000131410 N/A N/A N/A N/A N/A 0.401±0.00 N/A 0.454±0.22 N/A N/A 0.107±0.00 0.334±0.10 N/A N/A
ENSMUST00000135747 0.453±0.00 N/A N/A N/A 0.711±0.12 N/A 0.113±0.00 N/A N/A N/A N/A 0.666±0.00 N/A 0.721±0.00
ENSMUST00000146774 0.420±0.00 N/A N/A N/A N/A N/A N/A 0.201±0.08 N/A N/A N/A 0.396±0.00 0.974±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AU CIL_0003AU_0002 CGP 8:23411502-24156585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061419 zmat4b zinc finger, matrin type 4b protein_coding Danio_rerio
ENSDARG00000092987 zmat4a zinc finger, matrin type 4a protein_coding Danio_rerio
ENSG00000165061 ZMAT4 zinc finger, matrin-type 4 protein_coding Homo_sapiens

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