C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 4, 190kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165684 SNAPC4 9606 - 9:136375577-136398797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298532 SNAPC4-001 136375577-136398797 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298532 1.832±0.00 3.224±0.00 0.459±0.00 1.940±0.95 1.504±0.83 0.792±0.37 0.630±0.42 1.168±0.60 0.658±0.45 0.809±0.43 1.999±0.00 2.111±2.47 0.732±0.36 4.790±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E9 CIL_0002E9_0002 CGP 9:136361903-136398797
CIL_0002E3 CIL_0002E3_0002 CGP 9:136375577-136410609

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA:IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0009301 TAS snRNA transcription
GO:0010467 TAS gene expression
GO:0019185 IDA snRNA-activating protein complex
GO:0042795 IDA snRNA transcription from RNA polymerase II promoter
GO:0042796 IDA snRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067673 snapc4 small nuclear RNA activating complex, polypeptide 4 protein_coding Danio_rerio
ENSMUSG00000036281 Snapc4 small nuclear RNA activating complex, polypeptide 4 protein_coding Mus_musculus

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