C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear RNA activating complex, polypeptide 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036281 Snapc4 10090 - 2:26362765-26380653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035427 Snapc4-201 26362774-26380653 protein_coding
  ENSMUST00000114115 Snapc4-001 26362765-26380649 protein_coding
  ENSMUST00000123934 Snapc4-008 26369457-26373631 protein_coding
  ENSMUST00000124843 Snapc4-004 26377638-26380653 processed_transcript
  ENSMUST00000125789 Snapc4-011 26369507-26371142 processed_transcript
  ENSMUST00000133778 Snapc4-010 26370833-26373355 processed_transcript
  ENSMUST00000135171 Snapc4-013 26362767-26365024 processed_transcript
  ENSMUST00000136054 Snapc4-012 26366614-26367770 processed_transcript
  ENSMUST00000144871 Snapc4-006 26373562-26374738 processed_transcript
  ENSMUST00000148024 Snapc4-007 26369984-26374128 processed_transcript
  ENSMUST00000149316 Snapc4-009 26369486-26373611 processed_transcript
  ENSMUST00000149850 Snapc4-003 26362776-26380632 processed_transcript
  ENSMUST00000150121 Snapc4-002 26370833-26380635 processed_transcript
  ENSMUST00000155643 Snapc4-005 26378343-26380626 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035427ENSMUST00000114115ENSMUST00000123934ENSMUST00000135171ENSMUST00000149316ENSMUST00000149850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035427 2.589±0.40 3.301±1.21 N/A 3.118±0.00 3.455±0.00 1.833±0.50 0.899±0.20 2.843±1.09 1.969±1.18 3.606±1.69 0.641±0.00 8.792±3.76 3.685±1.10 2.532±1.12
ENSMUST00000114115 2.187±0.87 1.898±0.00 6.111±0.65 7.544±2.22 1.959±0.00 1.394±0.17 2.143±0.00 1.467±0.02 2.880±1.32 N/A 0.856±0.28 5.049±0.00 4.199±1.32 0.861±0.00
ENSMUST00000123934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.213±0.00
ENSMUST00000135171 N/A 9.439±1.69 N/A N/A N/A N/A 3.937±0.00 5.419±1.87 N/A N/A N/A 15.611±3.62 N/A 5.356±0.49
ENSMUST00000149316 N/A N/A N/A 30.480±0.00 N/A N/A N/A N/A N/A N/A N/A 17.116±0.00 11.868±4.08 N/A
ENSMUST00000149850 N/A N/A 2.326±0.00 N/A N/A N/A 0.702±0.00 0.689±0.10 N/A N/A 0.775±0.36 2.922±0.55 2.184±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E9 CIL_0002E9_0003 CGP 2:26352176-26380653
CIL_0002E3 CIL_0002E3_0003 CGP 2:26362765-26389316

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003682 IEA chromatin binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019185 ISS snRNA-activating protein complex
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0042796 ISS snRNA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067673 snapc4 small nuclear RNA activating complex, polypeptide 4 protein_coding Danio_rerio
ENSG00000165684 SNAPC4 small nuclear RNA activating complex, polypeptide 4, 190kDa protein_coding Homo_sapiens

Loading