C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002E3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000067673-ENSDARG00000095515 CGP 7955 5:52861124-52895312
GeneTranscriptPositionBiotype
ENSDARG00000095515 (sdccag3)
serologically defined colon cancer antigen 3 		ENSDART00000135817 (sdccag3-002) 52888577-52895281 processed_transcript
ENSDART00000142455 (sdccag3-001) 52886655-52895312 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002E3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165684-ENSG00000165689 CGP 9606 9:136375577-136410609
GeneTranscriptPositionBiotype
ENSG00000165684 (SNAPC4)
small nuclear RNA activating complex, polypeptide 4, 190kDa 		ENST00000298532 (SNAPC4-001) 136375577-136398797 protein_coding
ENSG00000165688 (PMPCA)
peptidase (mitochondrial processing) alpha 		ENST00000371717 (PMPCA-001) 136410570-136423761 protein_coding
ENST00000371720 (PMPCA-004) 136410658-136416555 retained_intron
ENST00000399219 (PMPCA-007) 136410661-136423760 protein_coding
ENST00000444897 (PMPCA-003) 136417194-136423760 protein_coding
ENST00000462616 (PMPCA-002) 136416067-136420933 retained_intron
ENST00000610649 (PMPCA-008) 136411118-136416297 processed_transcript
ENST00000612553 (PMPCA-005) 136410641-136416904 retained_intron
ENST00000614402 (PMPCA-010) 136410674-136412965 retained_intron
ENST00000619192 (PMPCA-011) 136410644-136412606 retained_intron
ENST00000620412 (PMPCA-009) 136410658-136412504 retained_intron
ENST00000620895 (PMPCA-012) 136412172-136417195 retained_intron
ENST00000622209 (PMPCA-006) 136410660-136416845 retained_intron
ENSG00000165689 (SDCCAG3)
serologically defined colon cancer antigen 3 		ENST00000298537 (SDCCAG3-001) 136401925-136410609 protein_coding
ENST00000357365 (SDCCAG3-002) 136401922-136410527 protein_coding
ENST00000371723 (SDCCAG3-004) 136407145-136410593 protein_coding
ENST00000371725 (SDCCAG3-003) 136401951-136410600 protein_coding
ENST00000417512 (SDCCAG3-007) 136402665-136407185 protein_coding
ENST00000446833 (SDCCAG3-006) 136407875-136410268 protein_coding
ENST00000461693 (SDCCAG3-011) 136402480-136405348 processed_transcript
ENST00000466579 (SDCCAG3-010) 136402682-136404780 processed_transcript
ENST00000468963 (SDCCAG3-009) 136407017-136407966 processed_transcript
ENST00000481114 (SDCCAG3-012) 136402644-136404108 processed_transcript
ENST00000486441 (SDCCAG3-008) 136404110-136407208 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002E3_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036281-ENSMUSG00000026927 CGP 10090 2:26362765-26389316
GeneTranscriptPositionBiotype
ENSMUSG00000026927 (Sdccag3)
serologically defined colon cancer antigen 3 		ENSMUST00000028293 (Sdccag3-001) 26382802-26389304 protein_coding
ENSMUST00000077983 (Sdccag3-003) 26382802-26389297 protein_coding
ENSMUST00000114100 (Sdccag3-005) 26382802-26389291 protein_coding
ENSMUST00000114102 (Sdccag3-002) 26382802-26389316 protein_coding
ENSMUST00000130954 (Sdccag3-006) 26386655-26389283 processed_transcript
ENSMUST00000132574 (Sdccag3-007) 26382803-26387581 processed_transcript
ENSMUST00000133737 (Sdccag3-004) 26386655-26389306 processed_transcript
ENSMUST00000134737 (Sdccag3-013) 26383555-26385213 processed_transcript
ENSMUST00000136972 (Sdccag3-012) 26383564-26385609 processed_transcript
ENSMUST00000137814 (Sdccag3-009) 26387126-26389267 processed_transcript
ENSMUST00000139738 (Sdccag3-011) 26387105-26388694 protein_coding
ENSMUST00000140074 (Sdccag3-010) 26387556-26389165 processed_transcript
ENSMUST00000140115 (Sdccag3-008) 26387013-26389295 processed_transcript
ENSMUSG00000036281 (Snapc4)
small nuclear RNA activating complex, polypeptide 4 		ENSMUST00000035427 (Snapc4-201) 26362774-26380653 protein_coding
ENSMUST00000114115 (Snapc4-001) 26362765-26380649 protein_coding
ENSMUST00000123934 (Snapc4-008) 26369457-26373631 protein_coding
ENSMUST00000124843 (Snapc4-004) 26377638-26380653 processed_transcript
ENSMUST00000125789 (Snapc4-011) 26369507-26371142 processed_transcript
ENSMUST00000133778 (Snapc4-010) 26370833-26373355 processed_transcript
ENSMUST00000135171 (Snapc4-013) 26362767-26365024 processed_transcript
ENSMUST00000136054 (Snapc4-012) 26366614-26367770 processed_transcript
ENSMUST00000144871 (Snapc4-006) 26373562-26374738 processed_transcript
ENSMUST00000148024 (Snapc4-007) 26369984-26374128 processed_transcript
ENSMUST00000149316 (Snapc4-009) 26369486-26373611 processed_transcript
ENSMUST00000149850 (Snapc4-003) 26362776-26380632 processed_transcript
ENSMUST00000150121 (Snapc4-002) 26370833-26380635 processed_transcript
ENSMUST00000155643 (Snapc4-005) 26378343-26380626 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E3_0001ENSDARG00000095515ENSDART00000135817ENSDART00000142455CIL_0002E3_0002ENSG00000165684ENST00000298532ENSG00000165688ENST00000371717ENST00000371720ENST00000399219ENST00000444897ENST00000462616ENST00000610649ENST00000612553ENST00000614402ENST00000619192ENST00000620412ENST00000620895ENST00000622209ENSG00000165689ENST00000298537ENST00000357365ENST00000371723ENST00000371725ENST00000417512ENST00000446833ENST00000461693ENST00000466579ENST00000468963ENST00000481114ENST00000486441CIL_0002E3_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E3_0001ENSDARG00000095515ENSDART00000135817ENSDART00000142455CIL_0002E3_0002ENSG00000165684ENST00000298532ENSG00000165688ENST00000371717ENST00000399219ENSG00000165689ENST00000298537ENST00000357365ENST00000371725CIL_0002E3_0003ENSMUSG00000026927ENSMUST00000028293ENSMUST00000077983ENSMUST00000114100ENSMUST00000114102ENSMUST00000132574ENSMUST00000133737ENSMUST00000134737ENSMUST00000137814ENSMUSG00000036281ENSMUST00000035427ENSMUST00000114115ENSMUST00000123934ENSMUST00000135171ENSMUST00000149316ENSMUST00000149850
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000095515 ENSDART00000135817 N/A N/A N/A N/A N/A N/A N/A N/A 0.317±0.00 N/A N/A N/A N/A N/A
ENSDART00000142455 N/A N/A N/A 3.736±2.80 N/A N/A 1.223±0.78 1.564±0.12 N/A N/A 0.648±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165684 ENST00000298532 1.832±0.00 3.224±0.00 0.459±0.00 1.940±0.95 1.504±0.83 0.792±0.37 0.630±0.42 1.168±0.60 0.658±0.45 0.809±0.43 1.999±0.00 2.111±2.47 0.732±0.36 4.790±1.02
ENSG00000165688 ENST00000371717 13.790±0.00 20.352±0.00 2.746±0.00 12.324±7.49 8.154±6.14 8.929±3.86 13.160±9.74 14.068±7.53 6.876±4.20 7.404±6.62 10.628±5.35 18.643±9.56 26.699±6.03 31.804±11.48
ENST00000371720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399219 N/A N/A N/A N/A N/A N/A N/A N/A 12.888±0.00 N/A N/A N/A N/A 7.623±0.00
ENST00000444897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165689 ENST00000298537 N/A N/A N/A N/A 3.030±0.00 N/A N/A N/A 5.184±0.00 N/A N/A 1.978±0.00 N/A N/A
ENST00000357365 N/A N/A N/A N/A N/A N/A N/A 6.530±0.00 N/A N/A N/A N/A N/A N/A
ENST00000371723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000371725 6.308±0.00 16.028±0.00 N/A N/A 4.076±2.66 7.410±0.00 4.613±0.00 5.391±0.00 10.267±0.00 6.757±0.00 3.504±1.99 15.938±11.65 9.218±4.02 26.695±18.27
ENST00000417512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481114 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026927 ENSMUST00000028293 11.912±2.55 21.640±2.69 6.398±0.00 N/A 14.382±5.94 22.541±5.37 5.907±1.71 22.320±0.96 11.151±5.67 15.236±3.26 1.847±0.42 16.813±4.63 8.368±2.10 N/A
ENSMUST00000077983 22.601±0.51 N/A 22.573±5.35 21.423±9.22 10.495±2.05 N/A 12.634±1.93 20.001±3.29 13.826±6.93 13.847±6.35 3.586±1.31 20.624±5.50 13.323±4.78 54.404±28.16
ENSMUST00000114100 N/A 23.804±6.71 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.356±5.61
ENSMUST00000114102 N/A 33.749±18.00 N/A N/A 12.407±3.35 12.628±0.00 3.679±0.00 N/A 2.803±0.00 7.833±1.62 N/A 16.009±4.43 N/A 123.675±19.71
ENSMUST00000130954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132574 8.565±1.39 N/A 15.171±4.18 22.227±6.72 8.245±2.68 N/A 5.402±0.00 N/A 5.292±1.14 8.820±0.25 1.676±0.51 20.058±6.77 8.540±3.65 N/A
ENSMUST00000133737 N/A 25.496±5.09 N/A 14.036±0.00 N/A 10.464±0.00 N/A N/A N/A N/A N/A 23.531±0.00 9.576±0.00 N/A
ENSMUST00000134737 N/A N/A N/A 48.578±18.89 N/A N/A N/A N/A N/A N/A N/A 32.402±0.00 N/A N/A
ENSMUST00000136972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137814 N/A 31.157±7.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036281 ENSMUST00000035427 2.589±0.40 3.301±1.21 N/A 3.118±0.00 3.455±0.00 1.833±0.50 0.899±0.20 2.843±1.09 1.969±1.18 3.606±1.69 0.641±0.00 8.792±3.76 3.685±1.10 2.532±1.12
ENSMUST00000114115 2.187±0.87 1.898±0.00 6.111±0.65 7.544±2.22 1.959±0.00 1.394±0.17 2.143±0.00 1.467±0.02 2.880±1.32 N/A 0.856±0.28 5.049±0.00 4.199±1.32 0.861±0.00
ENSMUST00000123934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.213±0.00
ENSMUST00000124843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135171 N/A 9.439±1.69 N/A N/A N/A N/A 3.937±0.00 5.419±1.87 N/A N/A N/A 15.611±3.62 N/A 5.356±0.49
ENSMUST00000136054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149316 N/A N/A N/A 30.480±0.00 N/A N/A N/A N/A N/A N/A N/A 17.116±0.00 11.868±4.08 N/A
ENSMUST00000149850 N/A N/A 2.326±0.00 N/A N/A N/A 0.702±0.00 0.689±0.10 N/A N/A 0.775±0.36 2.922±0.55 2.184±0.00 N/A
ENSMUST00000150121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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