C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter), member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165970 SLC6A5 9606 + 11:20599400-20659285 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298923 SLC6A5-002 20599594-20654890 nonsense_mediated_decay
  ENST00000525748 SLC6A5-001 20599400-20659285 protein_coding
  ENST00000528440 SLC6A5-003 20629184-20655064 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000525748ENST00000528440
Transcript ID Ovary Testis
ENST00000525748 0.007±0.00 0.099±0.00
ENST00000528440 N/A 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AR CIL_0004AR_0002 CGP 11:20387530-20659285
CIL_00043M CIL_00043M_0001 CGP 11:20599400-21575681

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 IDA plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0007268 TAS synaptic transmission
GO:0015375 IDA glycine:sodium symporter activity
GO:0016021 IEA integral component of membrane
GO:0036233 IDA glycine import
GO:0055085 TAS transmembrane transport
GO:0060012 IMP synaptic transmission, glycinergic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015880 slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein_coding Danio_rerio
ENSDARG00000067964 slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein_coding Danio_rerio
ENSMUSG00000039728 Slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein_coding Mus_musculus

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