C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165970-ENSG00000165973 CGP 9606 11:20599400-21575681
GeneTranscriptPositionBiotype
ENSG00000225477 (CTD-2302A16.2)
 ENST00000525269 (CTD-2302A16.2-001) 21283779-21284955 processed_pseudogene
ENSG00000254816 (RP11-670N15.2)
 ENST00000527400 (RP11-670N15.2-001) 21169748-21170137 processed_pseudogene
ENSG00000254906 (RP11-701I24.3)
 ENST00000528795 (RP11-701I24.3-001) 20670425-20671297 antisense
ENSG00000255167 (RP11-670N15.1)
 ENST00000526362 (RP11-670N15.1-001) 21260061-21262570 antisense
CIL_00043M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039728-ENSMUSG00000055409 CGP 10090 7:49910146-50865255
GeneTranscriptPositionBiotype
ENSMUSG00000039728 (Slc6a5)
solute carrier family 6 (neurotransmitter transporter, glycine), member 5 		ENSMUST00000056442 (Slc6a5-201) 49910146-49963856 protein_coding
ENSMUST00000107605 (Slc6a5-202) 49911700-49959493 protein_coding
ENSMUSG00000055409 (Nell1)
NEL-like 1 		ENSMUST00000081872 (Nell1-001) 49974864-50865255 protein_coding
ENSMUST00000107603 (Nell1-004) 49975334-50863358 protein_coding
ENSMUST00000145096 (Nell1-003) 49975069-50280036 retained_intron
ENSMUST00000151721 (Nell1-002) 49974864-50560889 protein_coding
ENSMUST00000154410 (Nell1-005) 50098310-50228861 processed_transcript
ENSMUSG00000084234 (4933405O20Rik)
RIKEN cDNA 4933405O20 gene 		ENSMUST00000119710 (4933405O20Rik-001) 50599190-50600530 protein_coding
ENSMUSG00000085265 (Nell1os)
NEL-like 1, opposite strand 		ENSMUST00000134584 (Nell1os-001) 50517309-50575884 antisense
ENSMUST00000136672 (Nell1os-002) 50562585-50574106 antisense
ENSMUST00000152166 (Nell1os-003) 50548940-50575971 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043M_0001ENSG00000225477ENST00000525269ENSG00000254816ENST00000527400ENSG00000254906ENST00000528795ENSG00000255167ENST00000526362CIL_00043M_0002ENSMUSG00000039728ENSMUST00000056442ENSMUST00000107605ENSMUSG00000055409ENSMUST00000081872ENSMUST00000107603ENSMUST00000145096ENSMUST00000151721ENSMUST00000154410ENSMUSG00000084234ENSMUST00000119710ENSMUSG00000085265ENSMUST00000134584ENSMUST00000136672ENSMUST00000152166
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043M_0001ENSG00000225477ENST00000525269ENSG00000254816ENST00000527400ENSG00000254906ENST00000528795ENSG00000255167ENST00000526362CIL_00043M_0002ENSMUSG00000039728ENSMUST00000056442ENSMUST00000107605ENSMUSG00000055409ENSMUST00000081872ENSMUST00000107603ENSMUST00000145096ENSMUST00000151721ENSMUST00000154410ENSMUSG00000084234ENSMUST00000119710ENSMUSG00000085265ENSMUST00000134584ENSMUST00000136672ENSMUST00000152166
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000225477 ENST00000525269 N/A N/A N/A N/A N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A 0.755±0.00
ENSG00000254816 ENST00000527400 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254906 ENST00000528795 N/A N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.01
ENSG00000255167 ENST00000526362 N/A N/A 0.335±0.00 N/A N/A N/A N/A 0.859±0.00 N/A N/A N/A N/A N/A 1.367±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039728 ENSMUST00000056442 N/A 0.595±0.00 N/A 1.212±1.54 N/A 0.010±0.00 0.006±0.00 0.005±0.00 0.005±0.00 0.006±0.00 N/A 0.017±0.01 0.004±0.00 0.013±0.01
ENSMUST00000107605 N/A 0.798±0.06 N/A N/A 0.035±0.00 0.021±0.00 N/A 0.030±0.02 0.003±0.00 N/A N/A N/A 0.020±0.01 0.013±0.00
ENSMUSG00000055409 ENSMUST00000081872 0.456±0.16 0.090±0.01 N/A 0.353±0.08 N/A 0.109±0.06 N/A N/A 0.006±0.00 0.019±0.00 N/A 0.268±0.12 0.057±0.00 0.030±0.02
ENSMUST00000107603 1.519±1.04 0.186±0.03 0.090±0.00 9.336±9.50 0.036±0.00 0.093±0.06 0.011±0.00 N/A 0.055±0.04 0.093±0.03 0.032±0.02 1.053±0.35 0.230±0.14 0.146±0.08
ENSMUST00000145096 0.082±0.00 0.095±0.03 N/A N/A N/A 0.122±0.03 N/A N/A N/A N/A 0.030±0.00 N/A 0.024±0.01 N/A
ENSMUST00000151721 1.609±1.10 0.218±0.10 0.031±0.00 1.898±0.54 N/A 0.089±0.03 N/A N/A 0.032±0.01 0.152±0.06 0.066±0.00 1.233±0.47 0.052±0.00 0.047±0.00
ENSMUST00000154410 0.117±0.00 N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084234 ENSMUST00000119710 0.058±0.00 N/A 0.006±0.00 0.134±0.04 N/A N/A N/A N/A 0.007±0.00 N/A N/A 0.136±0.05 0.012±0.00 28.957±9.30
ENSMUSG00000085265 ENSMUST00000134584 N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.597±0.54
ENSMUST00000136672 0.195±0.00 N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.203±0.46
ENSMUST00000152166 N/A N/A N/A 0.110±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 2.833±0.78

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