C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, glycine), member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039728 Slc6a5 10090 + 7:49910146-49963856 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056442 Slc6a5-201 49910146-49963856 protein_coding
  ENSMUST00000107605 Slc6a5-202 49911700-49959493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000056442ENSMUST00000107605
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000056442 0.595±0.00 1.212±1.54 N/A 0.010±0.00 0.006±0.00 0.005±0.00 0.005±0.00 0.006±0.00 0.017±0.01 0.004±0.00 0.013±0.01
ENSMUST00000107605 0.798±0.06 N/A 0.035±0.00 0.021±0.00 N/A 0.030±0.02 0.003±0.00 N/A N/A 0.020±0.01 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AR CIL_0004AR_0003 CGP 7:49778346-49963856
CIL_00043M CIL_00043M_0002 CGP 7:49910146-50865255

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005886 IEA plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0015375 IEA glycine:sodium symporter activity
GO:0016021 IEA integral component of membrane
GO:0036233 IEA glycine import
GO:0055085 IEA transmembrane transport
GO:0060012 IEA synaptic transmission, glycinergic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015880 slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein_coding Danio_rerio
ENSDARG00000067964 slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein_coding Danio_rerio
ENSG00000165970 SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 5 protein_coding Homo_sapiens

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