C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, class II, type 9B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166377 ATP9B 9606 + 18:79069285-79378283 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307671 ATP9B-004 79069397-79377491 protein_coding
  ENST00000426216 ATP9B-001 79069394-79378283 protein_coding
  ENST00000458297 ATP9B-201 79096513-79378141 protein_coding
  ENST00000490210 ATP9B-008 79113310-79364284 retained_intron
  ENST00000585674 ATP9B-017 79206936-79277264 retained_intron
  ENST00000586366 ATP9B-003 79069392-79255271 nonsense_mediated_decay
  ENST00000586672 ATP9B-012 79069406-79154529 protein_coding
  ENST00000586722 ATP9B-006 79069408-79116082 protein_coding
  ENST00000586774 ATP9B-024 79344139-79345840 retained_intron
  ENST00000587410 ATP9B-002 79372390-79374275 retained_intron
  ENST00000587878 ATP9B-018 79206977-79277200 nonsense_mediated_decay
  ENST00000587919 ATP9B-026 79359396-79374027 nonsense_mediated_decay
  ENST00000588600 ATP9B-011 79069285-79096481 protein_coding
  ENST00000588772 ATP9B-016 79154502-79194608 retained_intron
  ENST00000588895 ATP9B-023 79336626-79345486 nonsense_mediated_decay
  ENST00000588921 ATP9B-010 79347907-79378142 nonsense_mediated_decay
  ENST00000589326 ATP9B-021 79307112-79332998 protein_coding
  ENST00000589732 ATP9B-022 79307190-79333000 protein_coding
  ENST00000589951 ATP9B-025 79347808-79374197 retained_intron
  ENST00000590163 ATP9B-019 79299899-79329213 processed_transcript
  ENST00000590271 ATP9B-007 79087307-79277268 retained_intron
  ENST00000590477 ATP9B-009 79344328-79378266 nonsense_mediated_decay
  ENST00000590608 ATP9B-015 79126267-79144286 retained_intron
  ENST00000591395 ATP9B-013 79087315-79096535 processed_transcript
  ENST00000591464 ATP9B-014 79069482-79143859 processed_transcript
  ENST00000591518 ATP9B-020 79303604-79307440 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307671ENST00000426216ENST00000458297ENST00000490210ENST00000586366ENST00000586722ENST00000590271ENST00000590477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307671 2.490±0.00 2.286±0.00 1.784±0.00 4.472±1.59 2.373±1.03 1.910±0.36 0.731±0.02 1.642±0.15 2.950±0.00 1.638±0.56 1.582±0.00 2.559±1.60 1.439±0.40 3.097±0.27
ENST00000426216 N/A N/A N/A 1.880±0.00 0.837±0.00 N/A 0.540±0.00 N/A 1.082±0.00 0.660±0.00 0.936±0.00 0.952±0.00 0.599±0.00 1.433±0.00
ENST00000458297 N/A N/A N/A N/A N/A N/A 1.115±0.00 N/A N/A 7.793±0.00 N/A N/A N/A N/A
ENST00000490210 0.477±0.00 N/A 0.930±0.00 0.728±0.00 0.567±0.11 0.623±0.30 0.265±0.04 0.360±0.08 1.290±0.00 1.215±0.95 0.233±0.00 0.764±0.20 0.419±0.00 0.860±0.17
ENST00000586366 N/A N/A N/A N/A 1.613±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586722 N/A N/A 2.175±0.00 N/A 3.444±0.00 2.733±0.00 1.740±0.00 1.381±0.00 4.735±0.00 5.635±0.00 1.330±0.00 2.538±0.71 1.273±0.41 4.208±0.00
ENST00000590271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.056±0.00 N/A N/A N/A
ENST00000590477 2.110±0.00 2.929±0.00 N/A N/A 3.156±0.00 1.644±0.00 0.912±0.00 2.635±0.00 2.208±0.00 3.409±0.00 N/A 3.540±0.49 2.249±0.39 3.131±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007MA CIL_0007MA_0003 UCNEbase 18:78027502-79284092
CIL_0008KF CIL_0008KF_0001 VISTA 18:78942193-79542977
CIL_0008IX CIL_0008IX_0001 VISTA 18:78950009-79550795
CIL_000015 CIL_000015_0002 CGP 18:78980275-79378283
CIL_0008HP CIL_0008HP_0001 VISTA 18:78983189-79584144
CIL_000016 CIL_000016_0002 CGP 18:79069285-79529325

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000287 IEA magnesium ion binding
GO:0004012 IEA phospholipid-translocating ATPase activity
GO:0005524 IEA ATP binding
GO:0005802 IDA trans-Golgi network
GO:0008152 IEA metabolic process
GO:0015914 IEA phospholipid transport
GO:0016021 IEA integral component of membrane
GO:0019829 IEA cation-transporting ATPase activity
GO:0045332 NAS phospholipid translocation
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0072600 IMP establishment of protein localization to Golgi
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062521 atp9b ATPase, class II, type 9B protein_coding Danio_rerio
ENSMUSG00000024566 Atp9b ATPase, class II, type 9B protein_coding Mus_musculus

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