| Source ID |
Type |
Tax ID |
Position |
| SALL3 |
UCNEbase |
9606 |
18:78011823-78027497  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007MA_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000252260' => 'RNA, 5S ribosomal pseudogene 461',
'ENSG00000264334' => null,
'ENSG00000265843' => 'long intergenic non-protein coding RNA 1029',
'ENSG00000166377' => 'ATPase, class II, type 9B',
'ENSG00000199728' => 'RNA, U6 small nuclear 655, pseudogene',
'ENSG00000201723' => 'Y RNA',
'ENSG00000256463' => 'spalt-like transcription factor 3',
'ENSG00000263146' => null,
'ENSG00000265101' => null,
'ENSG00000265378' => null,
'ENSG00000265644' => null,
'ENSG00000266213' => null,
'ENSG00000266273' => null,
'ENSG00000266586' => null,
'ENSG00000267628' => null,
'ENSG00000267655' => null,
'ENSG00000279416' => null,
'ENSG00000279474' => null,
'ENSMUSG00000024565' => 'sal-like 3 (Drosophila)',
'ENSMUSG00000024566' => 'ATPase, class II, type 9B',
'ENSMUSG00000089257' => 'predicted gene, 25718',
'ENSMUSG00000092973' => 'predicted gene, 25071',
'ENSMUSG00000097181' => 'RIKEN cDNA 4930594M17 gene',
'ENSMUSG00000098720' => 'predicted gene 27239',
'ENSMUSG00000098880' => 'predicted gene 27238',
'ENSDARG00000079613' => 'sal-like 3a (Drosophila)',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sal-like 3b (Drosophila)',
'ENSDARG00000062521' => 'ATPase, class II, type 9B',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
),
'gene_name_arr' => array(
'ENSG00000252260' => 'RNA5SP461',
'ENSG00000264334' => 'RP11-671C19.2',
'ENSG00000265843' => 'LINC01029',
'ENSG00000166377' => 'ATP9B',
'ENSG00000199728' => 'RNU6-655P',
'ENSG00000201723' => 'Y_RNA',
'ENSG00000256463' => 'SALL3',
'ENSG00000263146' => 'RP11-849I19.1',
'ENSG00000265101' => 'CTD-2382H12.1',
'ENSG00000265378' => 'RP11-123I22.1',
'ENSG00000265644' => 'RP11-451L19.1',
'ENSG00000266213' => 'RP11-100K18.1',
'ENSG00000266273' => 'RP11-715C4.1',
'ENSG00000266586' => 'CTD-2382H12.2',
'ENSG00000267628' => 'RP11-1136J12.1',
'ENSG00000267655' => 'CTD-2286N8.2',
'ENSG00000279416' => 'RP11-849I19.2',
'ENSG00000279474' => 'CTD-2286N8.1',
'ENSMUSG00000024565' => 'Sall3',
'ENSMUSG00000024566' => 'Atp9b',
'ENSMUSG00000089257' => 'Gm25718',
'ENSMUSG00000092973' => 'Gm25071',
'ENSMUSG00000097181' => '4930594M17Rik',
'ENSMUSG00000098720' => 'Gm27239',
'ENSMUSG00000098880' => 'Gm27238',
'ENSDARG00000079613' => 'sall3a',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sall3b',
'ENSDARG00000062521' => 'atp9b',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 27 => 'Brain',
(int) 53 => 'Breast',
(int) 64 => 'Colon',
(int) 75 => 'Heart',
(int) 98 => 'Kidney',
(int) 118 => 'Liver',
(int) 134 => 'Lung',
(int) 145 => 'Muscle',
(int) 159 => 'Ovary',
(int) 169 => 'Placenta',
(int) 182 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 76,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000516451' => array(
'start' => '77863464',
'end' => '77863567',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP461-201'
),
'ENST00000579480' => array(
'start' => '77983020',
'end' => '77986610',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-671C19.2-001'
),
'ENST00000577408' => array(
'start' => '77971294',
'end' => '77972542',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-002'
),
'ENST00000578833' => array(
'start' => '77986874',
'end' => '77993698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-004'
),
'ENST00000582805' => array(
'start' => '77971814',
'end' => '77993722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-003'
),
'ENST00000583106' => array(
'start' => '77971504',
'end' => '77982839',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-001'
),
'ENST00000307671' => array(
'start' => '79069397',
'end' => '79377491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-004'
),
'ENST00000426216' => array(
'start' => '79069394',
'end' => '79378283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-001'
),
'ENST00000458297' => array(
'start' => '79096513',
'end' => '79378141',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-201'
),
'ENST00000490210' => array(
'start' => '79113310',
'end' => '79364284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-008'
),
'ENST00000585674' => array(
'start' => '79206936',
'end' => '79277264',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-017'
),
'ENST00000586366' => array(
'start' => '79069392',
'end' => '79255271',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-003'
),
'ENST00000586672' => array(
'start' => '79069406',
'end' => '79154529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-012'
),
'ENST00000586722' => array(
'start' => '79069408',
'end' => '79116082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-006'
),
'ENST00000586774' => array(
'start' => '79344139',
'end' => '79345840',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-024'
),
'ENST00000587410' => array(
'start' => '79372390',
'end' => '79374275',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-002'
),
'ENST00000587878' => array(
'start' => '79206977',
'end' => '79277200',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-018'
),
'ENST00000587919' => array(
'start' => '79359396',
'end' => '79374027',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-026'
),
'ENST00000588600' => array(
'start' => '79069285',
'end' => '79096481',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-011'
),
'ENST00000588772' => array(
'start' => '79154502',
'end' => '79194608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-016'
),
'ENST00000588895' => array(
'start' => '79336626',
'end' => '79345486',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-023'
),
'ENST00000588921' => array(
'start' => '79347907',
'end' => '79378142',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-010'
),
'ENST00000589326' => array(
'start' => '79307112',
'end' => '79332998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-021'
),
'ENST00000589732' => array(
'start' => '79307190',
'end' => '79333000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-022'
),
'ENST00000589951' => array(
'start' => '79347808',
'end' => '79374197',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-025'
),
'ENST00000590163' => array(
'start' => '79299899',
'end' => '79329213',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-019'
),
'ENST00000590271' => array(
'start' => '79087307',
'end' => '79277268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-007'
),
'ENST00000590477' => array(
'start' => '79344328',
'end' => '79378266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-009'
),
'ENST00000590608' => array(
'start' => '79126267',
'end' => '79144286',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-015'
),
'ENST00000591395' => array(
'start' => '79087315',
'end' => '79096535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-013'
),
'ENST00000591464' => array(
'start' => '79069482',
'end' => '79143859',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-014'
),
'ENST00000591518' => array(
'start' => '79303604',
'end' => '79307440',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-020'
),
'ENST00000362858' => array(
'start' => '78036739',
'end' => '78036845',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-655P-201'
),
'ENST00000364853' => array(
'start' => '78544095',
'end' => '78544188',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-489'
),
'ENST00000536229' => array(
'start' => '78991682',
'end' => '78997322',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-006'
),
'ENST00000537592' => array(
'start' => '78980275',
'end' => '78999974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-001'
),
'ENST00000572928' => array(
'start' => '78985010',
'end' => '78992162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SALL3-004'
),
'ENST00000573324' => array(
'start' => '78994798',
'end' => '79002677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-003'
),
'ENST00000575389' => array(
'start' => '78980275',
'end' => '78997631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-002'
),
'ENST00000616649' => array(
'start' => '78980275',
'end' => '78997397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-201'
),
'ENST00000572007' => array(
'start' => '78977288',
'end' => '78977883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-002'
),
'ENST00000573860' => array(
'start' => '78978351',
'end' => '78979074',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-003'
),
'ENST00000575722' => array(
'start' => '78976555',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-001'
),
'ENST00000583511' => array(
'start' => '78977095',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-004'
),
'ENST00000580639' => array(
'start' => '78925064',
'end' => '78927441',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.1-001'
),
'ENST00000581634' => array(
'start' => '78505165',
'end' => '78506410',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-123I22.1-001'
),
'ENST00000579769' => array(
'start' => '78480549',
'end' => '78484867',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-451L19.1-001'
),
'ENST00000577382' => array(
'start' => '78137223',
'end' => '78140887',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-100K18.1-001'
),
'ENST00000580487' => array(
'start' => '78795612',
'end' => '78796672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-715C4.1-001'
),
'ENST00000578030' => array(
'start' => '78908629',
'end' => '78918993',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.2-001'
),
'ENST00000591742' => array(
'start' => '79253577',
'end' => '79254856',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-1136J12.1-001'
),
'ENST00000586389' => array(
'start' => '79117207',
'end' => '79117920',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2286N8.2-001'
),
'ENST00000624383' => array(
'start' => '79085134',
'end' => '79086435',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-849I19.2-001'
),
'ENST00000625180' => array(
'start' => '79144752',
'end' => '79146918',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2286N8.1-001'
),
'ENSMUST00000057950' => array(
'start' => '80966376',
'end' => '80986578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sall3-201'
),
'ENSMUST00000091790' => array(
'start' => '80734143',
'end' => '80934058',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Atp9b-201'
),
'ENSMUST00000158632' => array(
'start' => '81026773',
'end' => '81026890',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25718-201'
),
'ENSMUST00000175232' => array(
'start' => '80925736',
'end' => '80925805',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25071-201'
),
'ENSMUST00000181204' => array(
'start' => '81226204',
'end' => '81236066',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930594M17Rik-001'
),
'ENSMUST00000184638' => array(
'start' => '80987456',
'end' => '80988575',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27239-001'
),
'ENSMUST00000185180' => array(
'start' => '80978913',
'end' => '80987869',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm27238-001'
),
'ENSDART00000109276' => array(
'start' => '7846559',
'end' => '7868177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3a-001'
),
'ENSDART00000148757' => array(
'start' => '7801612',
'end' => '7804760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-001'
),
'ENSDART00000148778' => array(
'start' => '7803193',
'end' => '7804020',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-003'
),
'ENSDART00000149123' => array(
'start' => '7801989',
'end' => '7803942',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-004'
),
'ENSDART00000149754' => array(
'start' => '7802192',
'end' => '7804353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-002'
),
'ENSDART00000148838' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-001'
),
'ENSDART00000148903' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-002'
),
'ENSDART00000149262' => array(
'start' => '7726071',
'end' => '7769996',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-004'
),
'ENSDART00000149377' => array(
'start' => '7747423',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-003'
),
'ENSDART00000155325' => array(
'start' => '7847696',
'end' => '7848886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-195i24.3-001'
),
'ENSDART00000080294' => array(
'start' => '22547104',
'end' => '22556332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-201'
),
'ENSDART00000100181' => array(
'start' => '22546499',
'end' => '22558378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-001'
),
'ENSDART00000090476' => array(
'start' => '22558793',
'end' => '22666391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-201'
),
'ENSDART00000136294' => array(
'start' => '22558765',
'end' => '22661545',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-001'
),
'ENSDART00000151492' => array(
'start' => '22501188',
'end' => '22502903',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-150o20.5-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
'ENSG00000264334' => array(
[maximum depth reached]
),
'ENSG00000265843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Adrenal',
(int) 4 => 'Testis'
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
'ENSG00000166377' => array(
[maximum depth reached]
),
'ENSG00000201723' => array(
[maximum depth reached]
),
'ENSG00000263146' => array(
[maximum depth reached]
),
'ENSG00000265101' => array(
[maximum depth reached]
),
'ENSG00000266213' => array(
[maximum depth reached]
),
'ENSG00000266273' => array(
[maximum depth reached]
),
'ENSG00000267655' => array(
[maximum depth reached]
),
'ENSG00000279416' => array(
[maximum depth reached]
),
'ENSG00000279474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Lung',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Heart',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Brain',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Testis',
(int) 73 => 'Bladder',
(int) 74 => 'Heart',
(int) 75 => 'Adrenal',
(int) 76 => 'Brain',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Testis',
(int) 80 => 'Brain',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Heart',
(int) 84 => 'Bladder',
(int) 85 => 'Placenta',
(int) 86 => 'Bladder',
(int) 87 => 'Brain',
(int) 88 => 'Kidney',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Colon',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Muscle',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Brain',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Kidney',
(int) 129 => 'Liver',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis'
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000024565' => array(
[maximum depth reached]
),
'ENSMUSG00000024566' => array(
[maximum depth reached]
),
'ENSMUSG00000097181' => array(
[maximum depth reached]
),
'ENSMUSG00000098720' => array(
[maximum depth reached]
),
'ENSMUSG00000098880' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Testis',
(int) 31 => 'Brain',
(int) 32 => 'Testis'
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079613' => array(
[maximum depth reached]
),
'ENSDARG00000095808' => array(
[maximum depth reached]
),
'ENSDARG00000097428' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Brain',
(int) 15 => 'Muscle'
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000057586' => array(
[maximum depth reached]
),
'ENSDARG00000062521' => array(
[maximum depth reached]
),
'ENSDARG00000096383' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Muscle',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000252260' => 'RNA, 5S ribosomal pseudogene 461',
'ENSG00000264334' => null,
'ENSG00000265843' => 'long intergenic non-protein coding RNA 1029',
'ENSG00000166377' => 'ATPase, class II, type 9B',
'ENSG00000199728' => 'RNA, U6 small nuclear 655, pseudogene',
'ENSG00000201723' => 'Y RNA',
'ENSG00000256463' => 'spalt-like transcription factor 3',
'ENSG00000263146' => null,
'ENSG00000265101' => null,
'ENSG00000265378' => null,
'ENSG00000265644' => null,
'ENSG00000266213' => null,
'ENSG00000266273' => null,
'ENSG00000266586' => null,
'ENSG00000267628' => null,
'ENSG00000267655' => null,
'ENSG00000279416' => null,
'ENSG00000279474' => null,
'ENSMUSG00000024565' => 'sal-like 3 (Drosophila)',
'ENSMUSG00000024566' => 'ATPase, class II, type 9B',
'ENSMUSG00000089257' => 'predicted gene, 25718',
'ENSMUSG00000092973' => 'predicted gene, 25071',
'ENSMUSG00000097181' => 'RIKEN cDNA 4930594M17 gene',
'ENSMUSG00000098720' => 'predicted gene 27239',
'ENSMUSG00000098880' => 'predicted gene 27238',
'ENSDARG00000079613' => 'sal-like 3a (Drosophila)',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sal-like 3b (Drosophila)',
'ENSDARG00000062521' => 'ATPase, class II, type 9B',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
)
$gene_name_arr = array(
'ENSG00000252260' => 'RNA5SP461',
'ENSG00000264334' => 'RP11-671C19.2',
'ENSG00000265843' => 'LINC01029',
'ENSG00000166377' => 'ATP9B',
'ENSG00000199728' => 'RNU6-655P',
'ENSG00000201723' => 'Y_RNA',
'ENSG00000256463' => 'SALL3',
'ENSG00000263146' => 'RP11-849I19.1',
'ENSG00000265101' => 'CTD-2382H12.1',
'ENSG00000265378' => 'RP11-123I22.1',
'ENSG00000265644' => 'RP11-451L19.1',
'ENSG00000266213' => 'RP11-100K18.1',
'ENSG00000266273' => 'RP11-715C4.1',
'ENSG00000266586' => 'CTD-2382H12.2',
'ENSG00000267628' => 'RP11-1136J12.1',
'ENSG00000267655' => 'CTD-2286N8.2',
'ENSG00000279416' => 'RP11-849I19.2',
'ENSG00000279474' => 'CTD-2286N8.1',
'ENSMUSG00000024565' => 'Sall3',
'ENSMUSG00000024566' => 'Atp9b',
'ENSMUSG00000089257' => 'Gm25718',
'ENSMUSG00000092973' => 'Gm25071',
'ENSMUSG00000097181' => '4930594M17Rik',
'ENSMUSG00000098720' => 'Gm27239',
'ENSMUSG00000098880' => 'Gm27238',
'ENSDARG00000079613' => 'sall3a',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sall3b',
'ENSDARG00000062521' => 'atp9b',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0001',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '77832840',
'seq_end' => '78009864',
'region_length' => '177024',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0002',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78011823',
'seq_end' => '78027497',
'region_length' => '15674',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0003',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78027502',
'seq_end' => '79284092',
'region_length' => '1256590',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0004',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '80787700',
'seq_end' => '81852865',
'region_length' => '1065165',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0005',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '7649867',
'seq_end' => '7905462',
'region_length' => '255595',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0006',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '22441887',
'seq_end' => '22606080',
'region_length' => '164193',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 27 => 'Brain',
(int) 53 => 'Breast',
(int) 64 => 'Colon',
(int) 75 => 'Heart',
(int) 98 => 'Kidney',
(int) 118 => 'Liver',
(int) 134 => 'Lung',
(int) 145 => 'Muscle',
(int) 159 => 'Ovary',
(int) 169 => 'Placenta',
(int) 182 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 76
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000516451' => array(
'start' => '77863464',
'end' => '77863567',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP461-201'
),
'ENST00000579480' => array(
'start' => '77983020',
'end' => '77986610',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-671C19.2-001'
),
'ENST00000577408' => array(
'start' => '77971294',
'end' => '77972542',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-002'
),
'ENST00000578833' => array(
'start' => '77986874',
'end' => '77993698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-004'
),
'ENST00000582805' => array(
'start' => '77971814',
'end' => '77993722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-003'
),
'ENST00000583106' => array(
'start' => '77971504',
'end' => '77982839',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-001'
),
'ENST00000307671' => array(
'start' => '79069397',
'end' => '79377491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-004'
),
'ENST00000426216' => array(
'start' => '79069394',
'end' => '79378283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-001'
),
'ENST00000458297' => array(
'start' => '79096513',
'end' => '79378141',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-201'
),
'ENST00000490210' => array(
'start' => '79113310',
'end' => '79364284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-008'
),
'ENST00000585674' => array(
'start' => '79206936',
'end' => '79277264',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-017'
),
'ENST00000586366' => array(
'start' => '79069392',
'end' => '79255271',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-003'
),
'ENST00000586672' => array(
'start' => '79069406',
'end' => '79154529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-012'
),
'ENST00000586722' => array(
'start' => '79069408',
'end' => '79116082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-006'
),
'ENST00000586774' => array(
'start' => '79344139',
'end' => '79345840',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-024'
),
'ENST00000587410' => array(
'start' => '79372390',
'end' => '79374275',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-002'
),
'ENST00000587878' => array(
'start' => '79206977',
'end' => '79277200',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-018'
),
'ENST00000587919' => array(
'start' => '79359396',
'end' => '79374027',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-026'
),
'ENST00000588600' => array(
'start' => '79069285',
'end' => '79096481',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-011'
),
'ENST00000588772' => array(
'start' => '79154502',
'end' => '79194608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-016'
),
'ENST00000588895' => array(
'start' => '79336626',
'end' => '79345486',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-023'
),
'ENST00000588921' => array(
'start' => '79347907',
'end' => '79378142',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-010'
),
'ENST00000589326' => array(
'start' => '79307112',
'end' => '79332998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-021'
),
'ENST00000589732' => array(
'start' => '79307190',
'end' => '79333000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-022'
),
'ENST00000589951' => array(
'start' => '79347808',
'end' => '79374197',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-025'
),
'ENST00000590163' => array(
'start' => '79299899',
'end' => '79329213',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-019'
),
'ENST00000590271' => array(
'start' => '79087307',
'end' => '79277268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-007'
),
'ENST00000590477' => array(
'start' => '79344328',
'end' => '79378266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-009'
),
'ENST00000590608' => array(
'start' => '79126267',
'end' => '79144286',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-015'
),
'ENST00000591395' => array(
'start' => '79087315',
'end' => '79096535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-013'
),
'ENST00000591464' => array(
'start' => '79069482',
'end' => '79143859',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-014'
),
'ENST00000591518' => array(
'start' => '79303604',
'end' => '79307440',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-020'
),
'ENST00000362858' => array(
'start' => '78036739',
'end' => '78036845',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-655P-201'
),
'ENST00000364853' => array(
'start' => '78544095',
'end' => '78544188',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-489'
),
'ENST00000536229' => array(
'start' => '78991682',
'end' => '78997322',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-006'
),
'ENST00000537592' => array(
'start' => '78980275',
'end' => '78999974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-001'
),
'ENST00000572928' => array(
'start' => '78985010',
'end' => '78992162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SALL3-004'
),
'ENST00000573324' => array(
'start' => '78994798',
'end' => '79002677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-003'
),
'ENST00000575389' => array(
'start' => '78980275',
'end' => '78997631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-002'
),
'ENST00000616649' => array(
'start' => '78980275',
'end' => '78997397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-201'
),
'ENST00000572007' => array(
'start' => '78977288',
'end' => '78977883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-002'
),
'ENST00000573860' => array(
'start' => '78978351',
'end' => '78979074',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-003'
),
'ENST00000575722' => array(
'start' => '78976555',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-001'
),
'ENST00000583511' => array(
'start' => '78977095',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-004'
),
'ENST00000580639' => array(
'start' => '78925064',
'end' => '78927441',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.1-001'
),
'ENST00000581634' => array(
'start' => '78505165',
'end' => '78506410',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-123I22.1-001'
),
'ENST00000579769' => array(
'start' => '78480549',
'end' => '78484867',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-451L19.1-001'
),
'ENST00000577382' => array(
'start' => '78137223',
'end' => '78140887',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-100K18.1-001'
),
'ENST00000580487' => array(
'start' => '78795612',
'end' => '78796672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-715C4.1-001'
),
'ENST00000578030' => array(
'start' => '78908629',
'end' => '78918993',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.2-001'
),
'ENST00000591742' => array(
'start' => '79253577',
'end' => '79254856',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-1136J12.1-001'
),
'ENST00000586389' => array(
'start' => '79117207',
'end' => '79117920',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2286N8.2-001'
),
'ENST00000624383' => array(
'start' => '79085134',
'end' => '79086435',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-849I19.2-001'
),
'ENST00000625180' => array(
'start' => '79144752',
'end' => '79146918',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2286N8.1-001'
),
'ENSMUST00000057950' => array(
'start' => '80966376',
'end' => '80986578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sall3-201'
),
'ENSMUST00000091790' => array(
'start' => '80734143',
'end' => '80934058',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Atp9b-201'
),
'ENSMUST00000158632' => array(
'start' => '81026773',
'end' => '81026890',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25718-201'
),
'ENSMUST00000175232' => array(
'start' => '80925736',
'end' => '80925805',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25071-201'
),
'ENSMUST00000181204' => array(
'start' => '81226204',
'end' => '81236066',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930594M17Rik-001'
),
'ENSMUST00000184638' => array(
'start' => '80987456',
'end' => '80988575',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27239-001'
),
'ENSMUST00000185180' => array(
'start' => '80978913',
'end' => '80987869',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm27238-001'
),
'ENSDART00000109276' => array(
'start' => '7846559',
'end' => '7868177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3a-001'
),
'ENSDART00000148757' => array(
'start' => '7801612',
'end' => '7804760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-001'
),
'ENSDART00000148778' => array(
'start' => '7803193',
'end' => '7804020',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-003'
),
'ENSDART00000149123' => array(
'start' => '7801989',
'end' => '7803942',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-004'
),
'ENSDART00000149754' => array(
'start' => '7802192',
'end' => '7804353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-002'
),
'ENSDART00000148838' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-001'
),
'ENSDART00000148903' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-002'
),
'ENSDART00000149262' => array(
'start' => '7726071',
'end' => '7769996',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-004'
),
'ENSDART00000149377' => array(
'start' => '7747423',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-003'
),
'ENSDART00000155325' => array(
'start' => '7847696',
'end' => '7848886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-195i24.3-001'
),
'ENSDART00000080294' => array(
'start' => '22547104',
'end' => '22556332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-201'
),
'ENSDART00000100181' => array(
'start' => '22546499',
'end' => '22558378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-001'
),
'ENSDART00000090476' => array(
'start' => '22558793',
'end' => '22666391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-201'
),
'ENSDART00000136294' => array(
'start' => '22558765',
'end' => '22661545',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-001'
),
'ENSDART00000151492' => array(
'start' => '22501188',
'end' => '22502903',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-150o20.5-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
'ENSG00000264334' => array(
[maximum depth reached]
),
'ENSG00000265843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Adrenal',
(int) 4 => 'Testis'
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
'ENSG00000166377' => array(
[maximum depth reached]
),
'ENSG00000201723' => array(
[maximum depth reached]
),
'ENSG00000263146' => array(
[maximum depth reached]
),
'ENSG00000265101' => array(
[maximum depth reached]
),
'ENSG00000266213' => array(
[maximum depth reached]
),
'ENSG00000266273' => array(
[maximum depth reached]
),
'ENSG00000267655' => array(
[maximum depth reached]
),
'ENSG00000279416' => array(
[maximum depth reached]
),
'ENSG00000279474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Lung',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Heart',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Brain',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Testis',
(int) 73 => 'Bladder',
(int) 74 => 'Heart',
(int) 75 => 'Adrenal',
(int) 76 => 'Brain',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Testis',
(int) 80 => 'Brain',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Heart',
(int) 84 => 'Bladder',
(int) 85 => 'Placenta',
(int) 86 => 'Bladder',
(int) 87 => 'Brain',
(int) 88 => 'Kidney',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Colon',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Muscle',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Brain',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Kidney',
(int) 129 => 'Liver',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis'
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000024565' => array(
[maximum depth reached]
),
'ENSMUSG00000024566' => array(
[maximum depth reached]
),
'ENSMUSG00000097181' => array(
[maximum depth reached]
),
'ENSMUSG00000098720' => array(
[maximum depth reached]
),
'ENSMUSG00000098880' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Testis',
(int) 31 => 'Brain',
(int) 32 => 'Testis'
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079613' => array(
[maximum depth reached]
),
'ENSDARG00000095808' => array(
[maximum depth reached]
),
'ENSDARG00000097428' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Brain',
(int) 15 => 'Muscle'
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000057586' => array(
[maximum depth reached]
),
'ENSDARG00000062521' => array(
[maximum depth reached]
),
'ENSDARG00000096383' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Muscle',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0002',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78011823',
'seq_end' => '78027497',
'region_length' => '15674',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
)
$gene_el = array(
'ENST00000577408' => array(
'Testis' => array(
'average_FPKM' => '0.494',
'stddev_FPKM' => '0.30'
)
),
'ENST00000578833' => array(
'Testis' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
)
),
'ENST00000582805' => array(
'Adrenal' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.142',
'stddev_FPKM' => '0.00'
)
),
'ENST00000583106' => array()
)
$gene_key = 'ENSG00000265843'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000583106'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000252260' => 'RNA, 5S ribosomal pseudogene 461',
'ENSG00000264334' => null,
'ENSG00000265843' => 'long intergenic non-protein coding RNA 1029',
'ENSG00000166377' => 'ATPase, class II, type 9B',
'ENSG00000199728' => 'RNA, U6 small nuclear 655, pseudogene',
'ENSG00000201723' => 'Y RNA',
'ENSG00000256463' => 'spalt-like transcription factor 3',
'ENSG00000263146' => null,
'ENSG00000265101' => null,
'ENSG00000265378' => null,
'ENSG00000265644' => null,
'ENSG00000266213' => null,
'ENSG00000266273' => null,
'ENSG00000266586' => null,
'ENSG00000267628' => null,
'ENSG00000267655' => null,
'ENSG00000279416' => null,
'ENSG00000279474' => null,
'ENSMUSG00000024565' => 'sal-like 3 (Drosophila)',
'ENSMUSG00000024566' => 'ATPase, class II, type 9B',
'ENSMUSG00000089257' => 'predicted gene, 25718',
'ENSMUSG00000092973' => 'predicted gene, 25071',
'ENSMUSG00000097181' => 'RIKEN cDNA 4930594M17 gene',
'ENSMUSG00000098720' => 'predicted gene 27239',
'ENSMUSG00000098880' => 'predicted gene 27238',
'ENSDARG00000079613' => 'sal-like 3a (Drosophila)',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sal-like 3b (Drosophila)',
'ENSDARG00000062521' => 'ATPase, class II, type 9B',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
),
'gene_name_arr' => array(
'ENSG00000252260' => 'RNA5SP461',
'ENSG00000264334' => 'RP11-671C19.2',
'ENSG00000265843' => 'LINC01029',
'ENSG00000166377' => 'ATP9B',
'ENSG00000199728' => 'RNU6-655P',
'ENSG00000201723' => 'Y_RNA',
'ENSG00000256463' => 'SALL3',
'ENSG00000263146' => 'RP11-849I19.1',
'ENSG00000265101' => 'CTD-2382H12.1',
'ENSG00000265378' => 'RP11-123I22.1',
'ENSG00000265644' => 'RP11-451L19.1',
'ENSG00000266213' => 'RP11-100K18.1',
'ENSG00000266273' => 'RP11-715C4.1',
'ENSG00000266586' => 'CTD-2382H12.2',
'ENSG00000267628' => 'RP11-1136J12.1',
'ENSG00000267655' => 'CTD-2286N8.2',
'ENSG00000279416' => 'RP11-849I19.2',
'ENSG00000279474' => 'CTD-2286N8.1',
'ENSMUSG00000024565' => 'Sall3',
'ENSMUSG00000024566' => 'Atp9b',
'ENSMUSG00000089257' => 'Gm25718',
'ENSMUSG00000092973' => 'Gm25071',
'ENSMUSG00000097181' => '4930594M17Rik',
'ENSMUSG00000098720' => 'Gm27239',
'ENSMUSG00000098880' => 'Gm27238',
'ENSDARG00000079613' => 'sall3a',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sall3b',
'ENSDARG00000062521' => 'atp9b',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 27 => 'Brain',
(int) 53 => 'Breast',
(int) 64 => 'Colon',
(int) 75 => 'Heart',
(int) 98 => 'Kidney',
(int) 118 => 'Liver',
(int) 134 => 'Lung',
(int) 145 => 'Muscle',
(int) 159 => 'Ovary',
(int) 169 => 'Placenta',
(int) 182 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 76,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000516451' => array(
'start' => '77863464',
'end' => '77863567',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP461-201'
),
'ENST00000579480' => array(
'start' => '77983020',
'end' => '77986610',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-671C19.2-001'
),
'ENST00000577408' => array(
'start' => '77971294',
'end' => '77972542',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-002'
),
'ENST00000578833' => array(
'start' => '77986874',
'end' => '77993698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-004'
),
'ENST00000582805' => array(
'start' => '77971814',
'end' => '77993722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-003'
),
'ENST00000583106' => array(
'start' => '77971504',
'end' => '77982839',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-001'
),
'ENST00000307671' => array(
'start' => '79069397',
'end' => '79377491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-004'
),
'ENST00000426216' => array(
'start' => '79069394',
'end' => '79378283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-001'
),
'ENST00000458297' => array(
'start' => '79096513',
'end' => '79378141',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-201'
),
'ENST00000490210' => array(
'start' => '79113310',
'end' => '79364284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-008'
),
'ENST00000585674' => array(
'start' => '79206936',
'end' => '79277264',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-017'
),
'ENST00000586366' => array(
'start' => '79069392',
'end' => '79255271',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-003'
),
'ENST00000586672' => array(
'start' => '79069406',
'end' => '79154529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-012'
),
'ENST00000586722' => array(
'start' => '79069408',
'end' => '79116082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-006'
),
'ENST00000586774' => array(
'start' => '79344139',
'end' => '79345840',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-024'
),
'ENST00000587410' => array(
'start' => '79372390',
'end' => '79374275',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-002'
),
'ENST00000587878' => array(
'start' => '79206977',
'end' => '79277200',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-018'
),
'ENST00000587919' => array(
'start' => '79359396',
'end' => '79374027',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-026'
),
'ENST00000588600' => array(
'start' => '79069285',
'end' => '79096481',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-011'
),
'ENST00000588772' => array(
'start' => '79154502',
'end' => '79194608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-016'
),
'ENST00000588895' => array(
'start' => '79336626',
'end' => '79345486',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-023'
),
'ENST00000588921' => array(
'start' => '79347907',
'end' => '79378142',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-010'
),
'ENST00000589326' => array(
'start' => '79307112',
'end' => '79332998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-021'
),
'ENST00000589732' => array(
'start' => '79307190',
'end' => '79333000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-022'
),
'ENST00000589951' => array(
'start' => '79347808',
'end' => '79374197',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-025'
),
'ENST00000590163' => array(
'start' => '79299899',
'end' => '79329213',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-019'
),
'ENST00000590271' => array(
'start' => '79087307',
'end' => '79277268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-007'
),
'ENST00000590477' => array(
'start' => '79344328',
'end' => '79378266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-009'
),
'ENST00000590608' => array(
'start' => '79126267',
'end' => '79144286',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-015'
),
'ENST00000591395' => array(
'start' => '79087315',
'end' => '79096535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-013'
),
'ENST00000591464' => array(
'start' => '79069482',
'end' => '79143859',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-014'
),
'ENST00000591518' => array(
'start' => '79303604',
'end' => '79307440',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-020'
),
'ENST00000362858' => array(
'start' => '78036739',
'end' => '78036845',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-655P-201'
),
'ENST00000364853' => array(
'start' => '78544095',
'end' => '78544188',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-489'
),
'ENST00000536229' => array(
'start' => '78991682',
'end' => '78997322',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-006'
),
'ENST00000537592' => array(
'start' => '78980275',
'end' => '78999974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-001'
),
'ENST00000572928' => array(
'start' => '78985010',
'end' => '78992162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SALL3-004'
),
'ENST00000573324' => array(
'start' => '78994798',
'end' => '79002677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-003'
),
'ENST00000575389' => array(
'start' => '78980275',
'end' => '78997631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-002'
),
'ENST00000616649' => array(
'start' => '78980275',
'end' => '78997397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-201'
),
'ENST00000572007' => array(
'start' => '78977288',
'end' => '78977883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-002'
),
'ENST00000573860' => array(
'start' => '78978351',
'end' => '78979074',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-003'
),
'ENST00000575722' => array(
'start' => '78976555',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-001'
),
'ENST00000583511' => array(
'start' => '78977095',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-004'
),
'ENST00000580639' => array(
'start' => '78925064',
'end' => '78927441',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.1-001'
),
'ENST00000581634' => array(
'start' => '78505165',
'end' => '78506410',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-123I22.1-001'
),
'ENST00000579769' => array(
'start' => '78480549',
'end' => '78484867',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-451L19.1-001'
),
'ENST00000577382' => array(
'start' => '78137223',
'end' => '78140887',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-100K18.1-001'
),
'ENST00000580487' => array(
'start' => '78795612',
'end' => '78796672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-715C4.1-001'
),
'ENST00000578030' => array(
'start' => '78908629',
'end' => '78918993',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.2-001'
),
'ENST00000591742' => array(
'start' => '79253577',
'end' => '79254856',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-1136J12.1-001'
),
'ENST00000586389' => array(
'start' => '79117207',
'end' => '79117920',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2286N8.2-001'
),
'ENST00000624383' => array(
'start' => '79085134',
'end' => '79086435',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-849I19.2-001'
),
'ENST00000625180' => array(
'start' => '79144752',
'end' => '79146918',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2286N8.1-001'
),
'ENSMUST00000057950' => array(
'start' => '80966376',
'end' => '80986578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sall3-201'
),
'ENSMUST00000091790' => array(
'start' => '80734143',
'end' => '80934058',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Atp9b-201'
),
'ENSMUST00000158632' => array(
'start' => '81026773',
'end' => '81026890',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25718-201'
),
'ENSMUST00000175232' => array(
'start' => '80925736',
'end' => '80925805',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25071-201'
),
'ENSMUST00000181204' => array(
'start' => '81226204',
'end' => '81236066',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930594M17Rik-001'
),
'ENSMUST00000184638' => array(
'start' => '80987456',
'end' => '80988575',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27239-001'
),
'ENSMUST00000185180' => array(
'start' => '80978913',
'end' => '80987869',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm27238-001'
),
'ENSDART00000109276' => array(
'start' => '7846559',
'end' => '7868177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3a-001'
),
'ENSDART00000148757' => array(
'start' => '7801612',
'end' => '7804760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-001'
),
'ENSDART00000148778' => array(
'start' => '7803193',
'end' => '7804020',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-003'
),
'ENSDART00000149123' => array(
'start' => '7801989',
'end' => '7803942',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-004'
),
'ENSDART00000149754' => array(
'start' => '7802192',
'end' => '7804353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-002'
),
'ENSDART00000148838' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-001'
),
'ENSDART00000148903' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-002'
),
'ENSDART00000149262' => array(
'start' => '7726071',
'end' => '7769996',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-004'
),
'ENSDART00000149377' => array(
'start' => '7747423',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-003'
),
'ENSDART00000155325' => array(
'start' => '7847696',
'end' => '7848886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-195i24.3-001'
),
'ENSDART00000080294' => array(
'start' => '22547104',
'end' => '22556332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-201'
),
'ENSDART00000100181' => array(
'start' => '22546499',
'end' => '22558378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-001'
),
'ENSDART00000090476' => array(
'start' => '22558793',
'end' => '22666391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-201'
),
'ENSDART00000136294' => array(
'start' => '22558765',
'end' => '22661545',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-001'
),
'ENSDART00000151492' => array(
'start' => '22501188',
'end' => '22502903',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-150o20.5-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
'ENSG00000264334' => array(
[maximum depth reached]
),
'ENSG00000265843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Adrenal',
(int) 4 => 'Testis'
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
'ENSG00000166377' => array(
[maximum depth reached]
),
'ENSG00000201723' => array(
[maximum depth reached]
),
'ENSG00000263146' => array(
[maximum depth reached]
),
'ENSG00000265101' => array(
[maximum depth reached]
),
'ENSG00000266213' => array(
[maximum depth reached]
),
'ENSG00000266273' => array(
[maximum depth reached]
),
'ENSG00000267655' => array(
[maximum depth reached]
),
'ENSG00000279416' => array(
[maximum depth reached]
),
'ENSG00000279474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Lung',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Heart',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Brain',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Testis',
(int) 73 => 'Bladder',
(int) 74 => 'Heart',
(int) 75 => 'Adrenal',
(int) 76 => 'Brain',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Testis',
(int) 80 => 'Brain',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Heart',
(int) 84 => 'Bladder',
(int) 85 => 'Placenta',
(int) 86 => 'Bladder',
(int) 87 => 'Brain',
(int) 88 => 'Kidney',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Colon',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Muscle',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Brain',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Kidney',
(int) 129 => 'Liver',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis'
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000024565' => array(
[maximum depth reached]
),
'ENSMUSG00000024566' => array(
[maximum depth reached]
),
'ENSMUSG00000097181' => array(
[maximum depth reached]
),
'ENSMUSG00000098720' => array(
[maximum depth reached]
),
'ENSMUSG00000098880' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Testis',
(int) 31 => 'Brain',
(int) 32 => 'Testis'
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079613' => array(
[maximum depth reached]
),
'ENSDARG00000095808' => array(
[maximum depth reached]
),
'ENSDARG00000097428' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Brain',
(int) 15 => 'Muscle'
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000057586' => array(
[maximum depth reached]
),
'ENSDARG00000062521' => array(
[maximum depth reached]
),
'ENSDARG00000096383' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Muscle',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000252260' => 'RNA, 5S ribosomal pseudogene 461',
'ENSG00000264334' => null,
'ENSG00000265843' => 'long intergenic non-protein coding RNA 1029',
'ENSG00000166377' => 'ATPase, class II, type 9B',
'ENSG00000199728' => 'RNA, U6 small nuclear 655, pseudogene',
'ENSG00000201723' => 'Y RNA',
'ENSG00000256463' => 'spalt-like transcription factor 3',
'ENSG00000263146' => null,
'ENSG00000265101' => null,
'ENSG00000265378' => null,
'ENSG00000265644' => null,
'ENSG00000266213' => null,
'ENSG00000266273' => null,
'ENSG00000266586' => null,
'ENSG00000267628' => null,
'ENSG00000267655' => null,
'ENSG00000279416' => null,
'ENSG00000279474' => null,
'ENSMUSG00000024565' => 'sal-like 3 (Drosophila)',
'ENSMUSG00000024566' => 'ATPase, class II, type 9B',
'ENSMUSG00000089257' => 'predicted gene, 25718',
'ENSMUSG00000092973' => 'predicted gene, 25071',
'ENSMUSG00000097181' => 'RIKEN cDNA 4930594M17 gene',
'ENSMUSG00000098720' => 'predicted gene 27239',
'ENSMUSG00000098880' => 'predicted gene 27238',
'ENSDARG00000079613' => 'sal-like 3a (Drosophila)',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sal-like 3b (Drosophila)',
'ENSDARG00000062521' => 'ATPase, class II, type 9B',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
)
$gene_name_arr = array(
'ENSG00000252260' => 'RNA5SP461',
'ENSG00000264334' => 'RP11-671C19.2',
'ENSG00000265843' => 'LINC01029',
'ENSG00000166377' => 'ATP9B',
'ENSG00000199728' => 'RNU6-655P',
'ENSG00000201723' => 'Y_RNA',
'ENSG00000256463' => 'SALL3',
'ENSG00000263146' => 'RP11-849I19.1',
'ENSG00000265101' => 'CTD-2382H12.1',
'ENSG00000265378' => 'RP11-123I22.1',
'ENSG00000265644' => 'RP11-451L19.1',
'ENSG00000266213' => 'RP11-100K18.1',
'ENSG00000266273' => 'RP11-715C4.1',
'ENSG00000266586' => 'CTD-2382H12.2',
'ENSG00000267628' => 'RP11-1136J12.1',
'ENSG00000267655' => 'CTD-2286N8.2',
'ENSG00000279416' => 'RP11-849I19.2',
'ENSG00000279474' => 'CTD-2286N8.1',
'ENSMUSG00000024565' => 'Sall3',
'ENSMUSG00000024566' => 'Atp9b',
'ENSMUSG00000089257' => 'Gm25718',
'ENSMUSG00000092973' => 'Gm25071',
'ENSMUSG00000097181' => '4930594M17Rik',
'ENSMUSG00000098720' => 'Gm27239',
'ENSMUSG00000098880' => 'Gm27238',
'ENSDARG00000079613' => 'sall3a',
'ENSDARG00000095808' => 'si:ch211-195i24.1',
'ENSDARG00000095883' => 'si:ch211-13b16.1',
'ENSDARG00000097428' => 'si:ch211-195i24.3',
'ENSDARG00000057586' => 'sall3b',
'ENSDARG00000062521' => 'atp9b',
'ENSDARG00000096383' => 'si:ch211-150o20.5'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0001',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '77832840',
'seq_end' => '78009864',
'region_length' => '177024',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0002',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78011823',
'seq_end' => '78027497',
'region_length' => '15674',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0003',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78027502',
'seq_end' => '79284092',
'region_length' => '1256590',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0004',
'tax_id' => '10090',
'chromosome' => '18',
'seq_start' => '80787700',
'seq_end' => '81852865',
'region_length' => '1065165',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0005',
'tax_id' => '7955',
'chromosome' => '16',
'seq_start' => '7649867',
'seq_end' => '7905462',
'region_length' => '255595',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0006',
'tax_id' => '7955',
'chromosome' => '19',
'seq_start' => '22441887',
'seq_end' => '22606080',
'region_length' => '164193',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 17 => 'Bladder',
(int) 27 => 'Brain',
(int) 53 => 'Breast',
(int) 64 => 'Colon',
(int) 75 => 'Heart',
(int) 98 => 'Kidney',
(int) 118 => 'Liver',
(int) 134 => 'Lung',
(int) 145 => 'Muscle',
(int) 159 => 'Ovary',
(int) 169 => 'Placenta',
(int) 182 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 76
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000516451' => array(
'start' => '77863464',
'end' => '77863567',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP461-201'
),
'ENST00000579480' => array(
'start' => '77983020',
'end' => '77986610',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-671C19.2-001'
),
'ENST00000577408' => array(
'start' => '77971294',
'end' => '77972542',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-002'
),
'ENST00000578833' => array(
'start' => '77986874',
'end' => '77993698',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-004'
),
'ENST00000582805' => array(
'start' => '77971814',
'end' => '77993722',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-003'
),
'ENST00000583106' => array(
'start' => '77971504',
'end' => '77982839',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01029-001'
),
'ENST00000307671' => array(
'start' => '79069397',
'end' => '79377491',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-004'
),
'ENST00000426216' => array(
'start' => '79069394',
'end' => '79378283',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-001'
),
'ENST00000458297' => array(
'start' => '79096513',
'end' => '79378141',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-201'
),
'ENST00000490210' => array(
'start' => '79113310',
'end' => '79364284',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-008'
),
'ENST00000585674' => array(
'start' => '79206936',
'end' => '79277264',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-017'
),
'ENST00000586366' => array(
'start' => '79069392',
'end' => '79255271',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-003'
),
'ENST00000586672' => array(
'start' => '79069406',
'end' => '79154529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-012'
),
'ENST00000586722' => array(
'start' => '79069408',
'end' => '79116082',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-006'
),
'ENST00000586774' => array(
'start' => '79344139',
'end' => '79345840',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-024'
),
'ENST00000587410' => array(
'start' => '79372390',
'end' => '79374275',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-002'
),
'ENST00000587878' => array(
'start' => '79206977',
'end' => '79277200',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-018'
),
'ENST00000587919' => array(
'start' => '79359396',
'end' => '79374027',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-026'
),
'ENST00000588600' => array(
'start' => '79069285',
'end' => '79096481',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-011'
),
'ENST00000588772' => array(
'start' => '79154502',
'end' => '79194608',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-016'
),
'ENST00000588895' => array(
'start' => '79336626',
'end' => '79345486',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-023'
),
'ENST00000588921' => array(
'start' => '79347907',
'end' => '79378142',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-010'
),
'ENST00000589326' => array(
'start' => '79307112',
'end' => '79332998',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-021'
),
'ENST00000589732' => array(
'start' => '79307190',
'end' => '79333000',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ATP9B-022'
),
'ENST00000589951' => array(
'start' => '79347808',
'end' => '79374197',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-025'
),
'ENST00000590163' => array(
'start' => '79299899',
'end' => '79329213',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-019'
),
'ENST00000590271' => array(
'start' => '79087307',
'end' => '79277268',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-007'
),
'ENST00000590477' => array(
'start' => '79344328',
'end' => '79378266',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'ATP9B-009'
),
'ENST00000590608' => array(
'start' => '79126267',
'end' => '79144286',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-015'
),
'ENST00000591395' => array(
'start' => '79087315',
'end' => '79096535',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-013'
),
'ENST00000591464' => array(
'start' => '79069482',
'end' => '79143859',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ATP9B-014'
),
'ENST00000591518' => array(
'start' => '79303604',
'end' => '79307440',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ATP9B-020'
),
'ENST00000362858' => array(
'start' => '78036739',
'end' => '78036845',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-655P-201'
),
'ENST00000364853' => array(
'start' => '78544095',
'end' => '78544188',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Y_RNA.1-489'
),
'ENST00000536229' => array(
'start' => '78991682',
'end' => '78997322',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-006'
),
'ENST00000537592' => array(
'start' => '78980275',
'end' => '78999974',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-001'
),
'ENST00000572928' => array(
'start' => '78985010',
'end' => '78992162',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SALL3-004'
),
'ENST00000573324' => array(
'start' => '78994798',
'end' => '79002677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-003'
),
'ENST00000575389' => array(
'start' => '78980275',
'end' => '78997631',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-002'
),
'ENST00000616649' => array(
'start' => '78980275',
'end' => '78997397',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SALL3-201'
),
'ENST00000572007' => array(
'start' => '78977288',
'end' => '78977883',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-002'
),
'ENST00000573860' => array(
'start' => '78978351',
'end' => '78979074',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-003'
),
'ENST00000575722' => array(
'start' => '78976555',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-001'
),
'ENST00000583511' => array(
'start' => '78977095',
'end' => '78978843',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-849I19.1-004'
),
'ENST00000580639' => array(
'start' => '78925064',
'end' => '78927441',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.1-001'
),
'ENST00000581634' => array(
'start' => '78505165',
'end' => '78506410',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-123I22.1-001'
),
'ENST00000579769' => array(
'start' => '78480549',
'end' => '78484867',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-451L19.1-001'
),
'ENST00000577382' => array(
'start' => '78137223',
'end' => '78140887',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-100K18.1-001'
),
'ENST00000580487' => array(
'start' => '78795612',
'end' => '78796672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-715C4.1-001'
),
'ENST00000578030' => array(
'start' => '78908629',
'end' => '78918993',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'CTD-2382H12.2-001'
),
'ENST00000591742' => array(
'start' => '79253577',
'end' => '79254856',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-1136J12.1-001'
),
'ENST00000586389' => array(
'start' => '79117207',
'end' => '79117920',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'CTD-2286N8.2-001'
),
'ENST00000624383' => array(
'start' => '79085134',
'end' => '79086435',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-849I19.2-001'
),
'ENST00000625180' => array(
'start' => '79144752',
'end' => '79146918',
'transcript_biotype' => 'TEC',
'transcript_name' => 'CTD-2286N8.1-001'
),
'ENSMUST00000057950' => array(
'start' => '80966376',
'end' => '80986578',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sall3-201'
),
'ENSMUST00000091790' => array(
'start' => '80734143',
'end' => '80934058',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Atp9b-201'
),
'ENSMUST00000158632' => array(
'start' => '81026773',
'end' => '81026890',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25718-201'
),
'ENSMUST00000175232' => array(
'start' => '80925736',
'end' => '80925805',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25071-201'
),
'ENSMUST00000181204' => array(
'start' => '81226204',
'end' => '81236066',
'transcript_biotype' => 'lincRNA',
'transcript_name' => '4930594M17Rik-001'
),
'ENSMUST00000184638' => array(
'start' => '80987456',
'end' => '80988575',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm27239-001'
),
'ENSMUST00000185180' => array(
'start' => '80978913',
'end' => '80987869',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm27238-001'
),
'ENSDART00000109276' => array(
'start' => '7846559',
'end' => '7868177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3a-001'
),
'ENSDART00000148757' => array(
'start' => '7801612',
'end' => '7804760',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-001'
),
'ENSDART00000148778' => array(
'start' => '7803193',
'end' => '7804020',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-003'
),
'ENSDART00000149123' => array(
'start' => '7801989',
'end' => '7803942',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-195i24.1-004'
),
'ENSDART00000149754' => array(
'start' => '7802192',
'end' => '7804353',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'si:ch211-195i24.1-002'
),
'ENSDART00000148838' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-001'
),
'ENSDART00000148903' => array(
'start' => '7747475',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-002'
),
'ENSDART00000149262' => array(
'start' => '7726071',
'end' => '7769996',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-004'
),
'ENSDART00000149377' => array(
'start' => '7747423',
'end' => '7770029',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-13b16.1-003'
),
'ENSDART00000155325' => array(
'start' => '7847696',
'end' => '7848886',
'transcript_biotype' => 'antisense',
'transcript_name' => 'si:ch211-195i24.3-001'
),
'ENSDART00000080294' => array(
'start' => '22547104',
'end' => '22556332',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-201'
),
'ENSDART00000100181' => array(
'start' => '22546499',
'end' => '22558378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sall3b-001'
),
'ENSDART00000090476' => array(
'start' => '22558793',
'end' => '22666391',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-201'
),
'ENSDART00000136294' => array(
'start' => '22558765',
'end' => '22661545',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'atp9b-001'
),
'ENSDART00000151492' => array(
'start' => '22501188',
'end' => '22502903',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-150o20.5-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MA_0001' => array(
'genes_in_region' => array(
'ENSG00000264334' => array(
[maximum depth reached]
),
'ENSG00000265843' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Testis',
(int) 1 => 'Testis',
(int) 2 => 'Testis',
(int) 3 => 'Adrenal',
(int) 4 => 'Testis'
)
),
'CIL_0007MA_0003' => array(
'genes_in_region' => array(
'ENSG00000166377' => array(
[maximum depth reached]
),
'ENSG00000201723' => array(
[maximum depth reached]
),
'ENSG00000263146' => array(
[maximum depth reached]
),
'ENSG00000265101' => array(
[maximum depth reached]
),
'ENSG00000266213' => array(
[maximum depth reached]
),
'ENSG00000266273' => array(
[maximum depth reached]
),
'ENSG00000267655' => array(
[maximum depth reached]
),
'ENSG00000279416' => array(
[maximum depth reached]
),
'ENSG00000279474' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Heart',
(int) 17 => 'Liver',
(int) 18 => 'Lung',
(int) 19 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Heart',
(int) 24 => 'Lung',
(int) 25 => 'Adipose',
(int) 26 => 'Bladder',
(int) 27 => 'Brain',
(int) 28 => 'Breast',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Kidney',
(int) 32 => 'Liver',
(int) 33 => 'Lung',
(int) 34 => 'Muscle',
(int) 35 => 'Ovary',
(int) 36 => 'Placenta',
(int) 37 => 'Testis',
(int) 38 => 'Breast',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Muscle',
(int) 51 => 'Adipose',
(int) 52 => 'Adrenal',
(int) 53 => 'Breast',
(int) 54 => 'Colon',
(int) 55 => 'Heart',
(int) 56 => 'Kidney',
(int) 57 => 'Liver',
(int) 58 => 'Lung',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Heart',
(int) 63 => 'Adrenal',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Kidney',
(int) 67 => 'Liver',
(int) 68 => 'Placenta',
(int) 69 => 'Brain',
(int) 70 => 'Liver',
(int) 71 => 'Muscle',
(int) 72 => 'Testis',
(int) 73 => 'Bladder',
(int) 74 => 'Heart',
(int) 75 => 'Adrenal',
(int) 76 => 'Brain',
(int) 77 => 'Colon',
(int) 78 => 'Heart',
(int) 79 => 'Testis',
(int) 80 => 'Brain',
(int) 81 => 'Placenta',
(int) 82 => 'Testis',
(int) 83 => 'Heart',
(int) 84 => 'Bladder',
(int) 85 => 'Placenta',
(int) 86 => 'Bladder',
(int) 87 => 'Brain',
(int) 88 => 'Kidney',
(int) 89 => 'Testis',
(int) 90 => 'Testis',
(int) 91 => 'Brain',
(int) 92 => 'Colon',
(int) 93 => 'Testis',
(int) 94 => 'Adipose',
(int) 95 => 'Adrenal',
(int) 96 => 'Brain',
(int) 97 => 'Breast',
(int) 98 => 'Colon',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Lung',
(int) 103 => 'Muscle',
(int) 104 => 'Ovary',
(int) 105 => 'Placenta',
(int) 106 => 'Testis',
(int) 107 => 'Adipose',
(int) 108 => 'Adrenal',
(int) 109 => 'Bladder',
(int) 110 => 'Brain',
(int) 111 => 'Breast',
(int) 112 => 'Colon',
(int) 113 => 'Heart',
(int) 114 => 'Kidney',
(int) 115 => 'Liver',
(int) 116 => 'Lung',
(int) 117 => 'Muscle',
(int) 118 => 'Ovary',
(int) 119 => 'Placenta',
(int) 120 => 'Testis',
(int) 121 => 'Adipose',
(int) 122 => 'Adrenal',
(int) 123 => 'Bladder',
(int) 124 => 'Brain',
(int) 125 => 'Breast',
(int) 126 => 'Colon',
(int) 127 => 'Heart',
(int) 128 => 'Kidney',
(int) 129 => 'Liver',
(int) 130 => 'Lung',
(int) 131 => 'Ovary',
(int) 132 => 'Placenta',
(int) 133 => 'Testis'
)
),
'CIL_0007MA_0004' => array(
'genes_in_region' => array(
'ENSMUSG00000024565' => array(
[maximum depth reached]
),
'ENSMUSG00000024566' => array(
[maximum depth reached]
),
'ENSMUSG00000097181' => array(
[maximum depth reached]
),
'ENSMUSG00000098720' => array(
[maximum depth reached]
),
'ENSMUSG00000098880' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 3 => 'Colon',
(int) 4 => 'Heart',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Lung',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 14 => 'Bladder',
(int) 15 => 'Brain',
(int) 16 => 'Breast',
(int) 17 => 'Colon',
(int) 18 => 'Heart',
(int) 19 => 'Kidney',
(int) 20 => 'Liver',
(int) 21 => 'Lung',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Testis',
(int) 27 => 'Brain',
(int) 28 => 'Heart',
(int) 29 => 'Kidney',
(int) 30 => 'Testis',
(int) 31 => 'Brain',
(int) 32 => 'Testis'
)
),
'CIL_0007MA_0005' => array(
'genes_in_region' => array(
'ENSDARG00000079613' => array(
[maximum depth reached]
),
'ENSDARG00000095808' => array(
[maximum depth reached]
),
'ENSDARG00000097428' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Brain',
(int) 13 => 'Kidney',
(int) 14 => 'Brain',
(int) 15 => 'Muscle'
)
),
'CIL_0007MA_0006' => array(
'genes_in_region' => array(
'ENSDARG00000057586' => array(
[maximum depth reached]
),
'ENSDARG00000062521' => array(
[maximum depth reached]
),
'ENSDARG00000096383' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Liver',
(int) 2 => 'Brain',
(int) 3 => 'Heart',
(int) 4 => 'Kidney',
(int) 5 => 'Muscle',
(int) 6 => 'Brain',
(int) 7 => 'Heart',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Muscle',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MA_0002',
'tax_id' => '9606',
'chromosome' => '18',
'seq_start' => '78011823',
'seq_end' => '78027497',
'region_length' => '15674',
'region_type' => 'UCNEbase',
'el_id' => 'SALL3'
)
)
$gene_el = array(
'ENST00000577408' => array(
'Testis' => array(
'average_FPKM' => '0.494',
'stddev_FPKM' => '0.30'
)
),
'ENST00000578833' => array(
'Testis' => array(
'average_FPKM' => '0.218',
'stddev_FPKM' => '0.00'
)
),
'ENST00000582805' => array(
'Adrenal' => array(
'average_FPKM' => '0.020',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.142',
'stddev_FPKM' => '0.00'
)
),
'ENST00000583106' => array()
)
$gene_key = 'ENSG00000265843'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000583106'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(RP11-671C19.2)