C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008HP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs885 VISTA 9606 18:78983189-79584144
GeneTranscriptPositionBiotype
ENSG00000131196 (NFATC1)
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 		ENST00000253506 (NFATC1-001) 79395856-79529325 protein_coding
ENST00000318065 (NFATC1-003) 79400322-79529323 protein_coding
ENST00000329101 (NFATC1-009) 79400336-79529323 protein_coding
ENST00000397790 (NFATC1-002) 79395944-79529323 protein_coding
ENST00000427363 (NFATC1-007) 79396225-79527577 protein_coding
ENST00000542384 (NFATC1-006) 79396225-79527577 protein_coding
ENST00000545796 (NFATC1-201) 79400274-79529323 protein_coding
ENST00000586434 (NFATC1-010) 79400392-79527577 protein_coding
ENST00000586695 (NFATC1-013) 79527119-79528578 processed_transcript
ENST00000587635 (NFATC1-005) 79396131-79467676 protein_coding
ENST00000590172 (NFATC1-012) 79523924-79529083 processed_transcript
ENST00000590224 (NFATC1-015) 79448270-79451068 processed_transcript
ENST00000590313 (NFATC1-008) 79400331-79527741 nonsense_mediated_decay
ENST00000590861 (NFATC1-018) 79493396-79527665 processed_transcript
ENST00000591065 (NFATC1-016) 79448572-79451068 retained_intron
ENST00000591089 (NFATC1-017) 79451079-79452131 retained_intron
ENST00000591814 (NFATC1-004) 79395930-79470014 protein_coding
ENST00000592223 (NFATC1-011) 79400333-79468001 protein_coding
ENSG00000166377 (ATP9B)
ATPase, class II, type 9B 		ENST00000307671 (ATP9B-004) 79069397-79377491 protein_coding
ENST00000426216 (ATP9B-001) 79069394-79378283 protein_coding
ENST00000458297 (ATP9B-201) 79096513-79378141 protein_coding
ENST00000490210 (ATP9B-008) 79113310-79364284 retained_intron
ENST00000585674 (ATP9B-017) 79206936-79277264 retained_intron
ENST00000586366 (ATP9B-003) 79069392-79255271 nonsense_mediated_decay
ENST00000586672 (ATP9B-012) 79069406-79154529 protein_coding
ENST00000586722 (ATP9B-006) 79069408-79116082 protein_coding
ENST00000586774 (ATP9B-024) 79344139-79345840 retained_intron
ENST00000587410 (ATP9B-002) 79372390-79374275 retained_intron
ENST00000587878 (ATP9B-018) 79206977-79277200 nonsense_mediated_decay
ENST00000587919 (ATP9B-026) 79359396-79374027 nonsense_mediated_decay
ENST00000588600 (ATP9B-011) 79069285-79096481 protein_coding
ENST00000588772 (ATP9B-016) 79154502-79194608 retained_intron
ENST00000588895 (ATP9B-023) 79336626-79345486 nonsense_mediated_decay
ENST00000588921 (ATP9B-010) 79347907-79378142 nonsense_mediated_decay
ENST00000589326 (ATP9B-021) 79307112-79332998 protein_coding
ENST00000589732 (ATP9B-022) 79307190-79333000 protein_coding
ENST00000589951 (ATP9B-025) 79347808-79374197 retained_intron
ENST00000590163 (ATP9B-019) 79299899-79329213 processed_transcript
ENST00000590271 (ATP9B-007) 79087307-79277268 retained_intron
ENST00000590477 (ATP9B-009) 79344328-79378266 nonsense_mediated_decay
ENST00000590608 (ATP9B-015) 79126267-79144286 retained_intron
ENST00000591395 (ATP9B-013) 79087315-79096535 processed_transcript
ENST00000591464 (ATP9B-014) 79069482-79143859 processed_transcript
ENST00000591518 (ATP9B-020) 79303604-79307440 retained_intron
ENSG00000267015 (RP11-800A18.4)
 ENST00000592906 (RP11-800A18.4-001) 79340258-79343972 antisense
ENSG00000267287 (RP11-567M16.1)
 ENST00000586798 (RP11-567M16.1-002) 79576460-79579808 retained_intron
ENST00000589723 (RP11-567M16.1-001) 79578063-79589010 lincRNA
ENSG00000267655 (CTD-2286N8.2)
 ENST00000586389 (CTD-2286N8.2-001) 79117207-79117920 sense_intronic
ENSG00000275186 (RP11-196B3.3)
 ENST00000621571 (RP11-196B3.3-001) 79470120-79470940 antisense
ENSG00000279077 (RP11-800A18.3)
 ENST00000625182 (RP11-800A18.3-001) 79352458-79354567 TEC
ENSG00000279397 (RP11-196B3.4)
 ENST00000622987 (RP11-196B3.4-001) 79515798-79516057 TEC
ENSG00000279416 (RP11-849I19.2)
 ENST00000624383 (RP11-849I19.2-001) 79085134-79086435 TEC
ENSG00000279474 (CTD-2286N8.1)
 ENST00000625180 (CTD-2286N8.1-001) 79144752-79146918 TEC
ENSG00000279637 (RP11-196B3.1)
 ENST00000624177 (RP11-196B3.1-001) 79420836-79422780 TEC
ENSG00000279981 (RP11-196B3.2)
 ENST00000624066 (RP11-196B3.2-001) 79496058-79498348 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0008HP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs885 VISTA 10090 18:80487642-81088565
GeneTranscriptPositionBiotype
ENSMUSG00000024565 (Sall3)
sal-like 3 (Drosophila) 		ENSMUST00000057950 (Sall3-201) 80966376-80986578 protein_coding
ENSMUSG00000024566 (Atp9b)
ATPase, class II, type 9B 		ENSMUST00000091790 (Atp9b-201) 80734143-80934058 protein_coding
ENSMUSG00000033016 (Nfatc1)
nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 		ENSMUST00000035800 (Nfatc1-201) 80647435-80708173 protein_coding
ENSMUST00000078049 (Nfatc1-202) 80606205-80713071 protein_coding
ENSMUST00000167977 (Nfatc1-203) 80606205-80708173 protein_coding
ENSMUST00000170905 (Nfatc1-204) 80606205-80713071 protein_coding
ENSMUSG00000098720 (Gm27239)
predicted gene 27239 		ENSMUST00000184638 (Gm27239-001) 80987456-80988575 antisense
ENSMUSG00000098880 (Gm27238)
predicted gene 27238 		ENSMUST00000185180 (Gm27238-001) 80978913-80987869 sense_overlapping

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131196 ENST00000253506 N/A N/A N/A 0.511±0.00 N/A N/A N/A N/A N/A N/A 3.900±0.00 0.914±0.00 0.835±0.00 N/A
ENST00000318065 2.699±0.00 2.551±0.00 0.057±0.00 N/A 3.401±0.00 N/A 0.601±0.50 0.757±0.00 N/A N/A 3.879±0.00 2.077±0.50 1.673±0.00 3.683±0.00
ENST00000329101 N/A N/A N/A 0.292±0.00 N/A 0.576±0.00 1.339±0.00 0.233±0.00 N/A N/A 10.451±0.00 2.387±0.00 1.351±0.23 N/A
ENST00000397790 N/A N/A N/A N/A N/A 0.709±0.00 1.316±0.00 N/A N/A 0.907±0.55 7.588±0.00 N/A N/A 4.658±0.00
ENST00000427363 N/A N/A 0.140±0.00 N/A N/A N/A N/A 0.600±0.00 N/A N/A 1.382±0.00 N/A N/A N/A
ENST00000542384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545796 1.165±0.00 4.578±0.00 N/A 0.574±0.00 2.454±0.00 1.204±0.00 N/A 0.737±0.00 N/A 2.624±0.00 4.116±2.65 N/A 1.484±0.00 2.998±1.36
ENST00000586434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.463±0.00 N/A N/A
ENST00000586695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.334±0.00 N/A N/A
ENST00000587635 N/A N/A N/A N/A 0.405±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590172 N/A N/A 0.214±0.00 0.116±0.00 N/A N/A 0.109±0.00 N/A 0.556±0.00 N/A N/A 1.146±0.85 2.808±0.00 12.729±0.00
ENST00000590224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590313 N/A N/A N/A N/A N/A 0.314±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591065 N/A N/A 1.731±0.00 N/A N/A N/A N/A 1.222±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.842±0.00 N/A N/A
ENST00000591814 N/A N/A 0.067±0.00 0.010±0.00 N/A 0.114±0.00 N/A N/A 0.363±0.00 N/A N/A 1.008±0.00 N/A N/A
ENST00000592223 2.292±0.00 4.084±0.00 N/A N/A 2.103±1.97 3.355±0.00 1.815±0.00 0.852±0.00 0.416±0.00 8.983±0.00 N/A 3.047±0.00 1.620±0.30 4.480±0.00
ENSG00000166377 ENST00000307671 2.490±0.00 2.286±0.00 1.784±0.00 4.472±1.59 2.373±1.03 1.910±0.36 0.731±0.02 1.642±0.15 2.950±0.00 1.638±0.56 1.582±0.00 2.559±1.60 1.439±0.40 3.097±0.27
ENST00000426216 N/A N/A N/A 1.880±0.00 0.837±0.00 N/A 0.540±0.00 N/A 1.082±0.00 0.660±0.00 0.936±0.00 0.952±0.00 0.599±0.00 1.433±0.00
ENST00000458297 N/A N/A N/A N/A N/A N/A 1.115±0.00 N/A N/A 7.793±0.00 N/A N/A N/A N/A
ENST00000490210 0.477±0.00 N/A 0.930±0.00 0.728±0.00 0.567±0.11 0.623±0.30 0.265±0.04 0.360±0.08 1.290±0.00 1.215±0.95 0.233±0.00 0.764±0.20 0.419±0.00 0.860±0.17
ENST00000585674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586366 N/A N/A N/A N/A 1.613±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586722 N/A N/A 2.175±0.00 N/A 3.444±0.00 2.733±0.00 1.740±0.00 1.381±0.00 4.735±0.00 5.635±0.00 1.330±0.00 2.538±0.71 1.273±0.41 4.208±0.00
ENST00000586774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.056±0.00 N/A N/A N/A
ENST00000590477 2.110±0.00 2.929±0.00 N/A N/A 3.156±0.00 1.644±0.00 0.912±0.00 2.635±0.00 2.208±0.00 3.409±0.00 N/A 3.540±0.49 2.249±0.39 3.131±0.00
ENST00000590608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267015 ENST00000592906 N/A N/A N/A 0.034±0.00 N/A 0.798±0.00 0.220±0.00 N/A 0.699±0.67 0.537±0.00 N/A 0.226±0.17 N/A 0.099±0.02
ENSG00000267287 ENST00000586798 0.022±0.00 0.164±0.00 N/A 0.211±0.15 0.143±0.08 0.038±0.00 0.090±0.00 0.008±0.00 0.043±0.00 0.008±0.00 N/A 0.254±0.22 0.034±0.00 0.190±0.00
ENST00000589723 N/A 0.060±0.00 N/A 0.055±0.00 N/A N/A 0.036±0.00 0.039±0.00 N/A N/A N/A 0.201±0.00 0.016±0.00 0.194±0.14
ENSG00000267655 ENST00000586389 0.341±0.00 0.966±0.00 N/A 0.542±0.00 0.524±0.28 0.360±0.17 0.118±0.09 0.618±0.00 0.157±0.07 0.249±0.01 0.378±0.00 1.150±1.09 0.191±0.09 1.137±0.56
ENSG00000275186 ENST00000621571 N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A 0.644±0.00 N/A 0.091±0.00 N/A 0.178±0.00
ENSG00000279077 ENST00000625182 0.072±0.00 0.257±0.00 0.566±0.00 0.230±0.00 0.170±0.09 0.284±0.28 0.096±0.02 0.140±0.01 0.192±0.14 0.317±0.30 0.015±0.00 0.108±0.08 0.021±0.00 0.122±0.04
ENSG00000279397 ENST00000622987 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.00 N/A 0.231±0.00 0.424±0.00 1.133±1.06
ENSG00000279416 ENST00000624383 0.151±0.00 0.258±0.00 0.212±0.00 0.136±0.06 0.139±0.08 0.059±0.02 0.178±0.06 0.124±0.00 0.043±0.00 0.126±0.03 0.054±0.00 0.156±0.16 0.027±0.00 0.134±0.02
ENSG00000279474 ENST00000625180 0.052±0.00 0.271±0.00 0.226±0.00 0.083±0.05 0.194±0.00 0.134±0.10 0.033±0.00 0.070±0.00 0.027±0.00 0.331±0.00 N/A 0.170±0.09 0.119±0.00 0.301±0.00
ENSG00000279637 ENST00000624177 N/A 0.034±0.00 0.167±0.00 0.052±0.00 0.061±0.00 0.243±0.10 0.065±0.00 N/A N/A 0.168±0.00 N/A 0.048±0.03 N/A 0.209±0.14
ENSG00000279981 ENST00000624066 0.014±0.00 0.208±0.00 N/A 0.078±0.00 0.261±0.00 0.170±0.13 0.021±0.01 N/A 0.214±0.00 0.393±0.00 0.371±0.00 0.187±0.02 0.029±0.00 0.174±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024565 ENSMUST00000057950 N/A 0.009±0.01 0.066±0.02 3.207±2.38 N/A 0.012±0.01 0.012±0.01 0.706±0.12 0.005±0.01 0.012±0.01 0.007±0.00 0.029±0.02 0.054±0.03 0.734±0.37
ENSMUSG00000024566 ENSMUST00000091790 6.663±1.71 10.128±6.51 8.489±4.42 8.889±2.60 9.817±5.77 6.898±1.29 1.860±0.48 5.243±1.96 4.076±2.15 9.502±1.72 2.402±0.98 10.226±3.62 7.983±4.93 11.810±3.75
ENSMUSG00000033016 ENSMUST00000035800 2.627±0.25 3.641±0.51 0.646±0.36 0.212±0.14 8.095±3.67 3.319±0.93 1.626±0.47 1.461±0.15 1.248±0.49 5.316±1.45 2.349±0.25 1.782±0.65 0.783±0.95 0.154±0.01
ENSMUST00000078049 0.992±0.16 0.591±0.07 0.463±0.00 0.161±0.06 2.790±0.94 0.998±0.13 0.755±0.00 N/A 0.264±0.01 N/A 3.160±1.34 0.621±0.18 0.554±0.35 N/A
ENSMUST00000167977 1.101±0.28 1.607±0.31 0.232±0.00 0.363±0.17 2.508±0.74 1.410±0.37 0.931±0.46 0.663±0.15 0.417±0.18 2.237±0.07 3.037±0.84 0.584±0.14 0.750±0.54 0.065±0.00
ENSMUST00000170905 0.602±0.00 N/A N/A 0.102±0.00 2.345±0.57 1.044±0.00 0.377±0.00 N/A N/A 2.501±0.00 1.142±0.07 0.283±0.00 0.235±0.00 N/A
ENSMUSG00000098720 ENSMUST00000184638 N/A N/A N/A 0.250±0.06 N/A N/A 0.052±0.00 0.056±0.00 N/A N/A N/A N/A N/A 0.484±0.25
ENSMUSG00000098880 ENSMUST00000185180 N/A N/A N/A 0.337±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.210±0.10

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