C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Hepatoma-derived growth factor-related protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166503 HDGFRP3 9606 - 15:83112738-83208018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299633 HDGFRP3-001 83127753-83208018 protein_coding
  ENST00000562702 HDGFRP3-003 83157351-83169231 protein_coding
  ENST00000563404 HDGFRP3-005 83164039-83207528 nonsense_mediated_decay
  ENST00000563790 HDGFRP3-004 83139132-83207541 nonsense_mediated_decay
  ENST00000568129 HDGFRP3-002 83163770-83207450 retained_intron
  ENST00000568294 HDGFRP3-006 83112738-83157989 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299633ENST00000562702ENST00000563790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299633 3.789±0.00 3.326±0.00 0.435±0.00 4.706±1.74 0.875±0.45 2.489±1.68 1.380±0.86 1.107±0.80 0.832±0.68 2.020±1.44 0.397±0.30 1.760±1.06 0.917±0.08 4.717±1.44
ENST00000562702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.747±0.00 7.112±0.00 85.813±0.00
ENST00000563790 25.167±0.00 18.289±0.00 4.350±0.00 35.786±15.12 5.553±0.06 14.241±11.75 9.051±6.48 9.960±0.00 4.942±4.34 18.935±0.00 N/A 8.783±8.49 5.271±0.78 42.293±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0001 CGP 15:83107407-83208018
CIL_00037Q CIL_00037Q_0001 CGP 15:83112738-83284716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008083 IEA growth factor activity
GO:0008283 NAS cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074354 CABZ01088864.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000025104 Hdgfrp3 hepatoma-derived growth factor, related protein 3 protein_coding Mus_musculus

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