C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00037Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166503-ENSG00000169594 CGP 9606 15:83112738-83284716
GeneTranscriptPositionBiotype
ENSG00000166503 (HDGFRP3)
Hepatoma-derived growth factor-related protein 3 		ENST00000299633 (HDGFRP3-001) 83127753-83208018 protein_coding
ENST00000562702 (HDGFRP3-003) 83157351-83169231 protein_coding
ENST00000563404 (HDGFRP3-005) 83164039-83207528 nonsense_mediated_decay
ENST00000563790 (HDGFRP3-004) 83139132-83207541 nonsense_mediated_decay
ENST00000568129 (HDGFRP3-002) 83163770-83207450 retained_intron
ENST00000568294 (HDGFRP3-006) 83112738-83157989 protein_coding
ENSG00000169594 (BNC1)
basonuclin 1 		ENST00000345382 (BNC1-001) 83255903-83284714 protein_coding
ENST00000569704 (BNC1-003) 83257344-83283319 protein_coding
ENST00000618086 (BNC1-201) 83255905-83284716 protein_coding
ENSG00000259986 (RP11-382A20.4)
 ENST00000561498 (RP11-382A20.4-002) 83180802-83184796 antisense
ENST00000565495 (RP11-382A20.4-003) 83184805-83439445 antisense
ENST00000568634 (RP11-382A20.4-001) 83179182-83186068 antisense
CIL_00037Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025104-ENSMUSG00000025105 CGP 10090 7:81881251-81992299
GeneTranscriptPositionBiotype
ENSMUSG00000025104 (Hdgfrp3)
hepatoma-derived growth factor, related protein 3 		ENSMUST00000026094 (Hdgfrp3-002) 81891974-81934459 protein_coding
ENSMUST00000107305 (Hdgfrp3-001) 81881251-81934473 protein_coding
ENSMUST00000149288 (Hdgfrp3-003) 81897811-81934023 retained_intron
ENSMUSG00000025105 (Bnc1)
basonuclin 1 		ENSMUST00000026096 (Bnc1-201) 81966672-81992299 protein_coding
ENSMUSG00000038623 (Tm6sf1)
transmembrane 6 superfamily member 1 		ENSMUST00000041890 (Tm6sf1-001) 81859001-81884071 protein_coding
ENSMUST00000119543 (Tm6sf1-005) 81862687-81883419 protein_coding
ENSMUST00000124616 (Tm6sf1-003) 81859020-81873877 retained_intron
ENSMUST00000126334 (Tm6sf1-002) 81859151-81884434 nonsense_mediated_decay
ENSMUST00000130006 (Tm6sf1-007) 81873493-81883407 retained_intron
ENSMUST00000134861 (Tm6sf1-006) 81859118-81865398 processed_transcript
ENSMUST00000147977 (Tm6sf1-004) 81869733-81872415 retained_intron
ENSMUSG00000052779 (4833418N17Rik)
RIKEN cDNA 4833418N17 gene 		ENSMUST00000064826 (4833418N17Rik-201) 81992002-81992618 pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037Q_0001ENSG00000166503ENST00000299633ENST00000562702ENST00000563404ENST00000563790ENST00000568129ENST00000568294ENSG00000169594ENST00000345382ENST00000569704ENST00000618086ENSG00000259986ENST00000561498ENST00000565495ENST00000568634CIL_00037Q_0002ENSMUSG00000025104ENSMUST00000026094ENSMUST00000107305ENSMUST00000149288ENSMUSG00000025105ENSMUST00000026096ENSMUSG00000038623ENSMUST00000041890ENSMUST00000119543ENSMUST00000124616ENSMUST00000126334ENSMUST00000130006ENSMUST00000134861ENSMUST00000147977ENSMUSG00000052779ENSMUST00000064826
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037Q_0001ENSG00000166503ENST00000299633ENST00000562702ENST00000563790ENSG00000169594ENST00000345382ENST00000569704ENST00000618086ENSG00000259986ENST00000561498ENST00000565495ENST00000568634CIL_00037Q_0002ENSMUSG00000025104ENSMUST00000026094ENSMUST00000107305ENSMUSG00000025105ENSMUST00000026096ENSMUSG00000038623ENSMUST00000041890ENSMUST00000119543ENSMUST00000124616ENSMUST00000130006ENSMUST00000134861ENSMUST00000147977ENSMUSG00000052779ENSMUST00000064826
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166503 ENST00000299633 3.789±0.00 3.326±0.00 0.435±0.00 4.706±1.74 0.875±0.45 2.489±1.68 1.380±0.86 1.107±0.80 0.832±0.68 2.020±1.44 0.397±0.30 1.760±1.06 0.917±0.08 4.717±1.44
ENST00000562702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.747±0.00 7.112±0.00 85.813±0.00
ENST00000563404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563790 25.167±0.00 18.289±0.00 4.350±0.00 35.786±15.12 5.553±0.06 14.241±11.75 9.051±6.48 9.960±0.00 4.942±4.34 18.935±0.00 N/A 8.783±8.49 5.271±0.78 42.293±0.87
ENST00000568129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169594 ENST00000345382 0.010±0.00 N/A N/A 0.012±0.00 0.054±0.00 N/A 0.045±0.01 0.019±0.00 0.020±0.00 0.056±0.03 N/A 0.133±0.07 0.269±0.11 N/A
ENST00000569704 N/A N/A 0.015±0.00 N/A N/A 0.070±0.02 N/A 0.074±0.00 N/A 0.102±0.05 N/A 0.211±0.16 N/A N/A
ENST00000618086 0.010±0.00 N/A N/A 0.012±0.00 0.054±0.00 N/A 0.047±0.00 0.019±0.00 0.021±0.00 0.058±0.03 N/A 0.135±0.07 0.296±0.14 N/A
ENSG00000259986 ENST00000561498 0.403±0.00 0.754±0.00 0.660±0.00 0.231±0.00 0.369±0.00 0.500±0.00 0.276±0.13 0.317±0.00 N/A 0.546±0.00 0.266±0.00 0.470±0.38 N/A 0.169±0.02
ENST00000565495 0.533±0.00 2.488±0.00 N/A 0.690±0.00 1.150±0.00 0.311±0.00 0.787±0.00 0.993±0.00 0.311±0.00 0.100±0.00 0.506±0.00 4.688±0.00 N/A 0.218±0.00
ENST00000568634 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025104 ENSMUST00000026094 3.533±0.34 5.041±2.33 N/A N/A N/A 1.556±0.38 N/A N/A N/A N/A N/A 8.745±2.84 N/A 2.573±1.49
ENSMUST00000107305 4.718±0.71 1.617±0.00 3.865±0.52 27.497±7.66 3.490±0.91 1.484±0.24 1.303±0.38 1.586±0.27 0.639±0.50 4.020±0.39 0.798±0.23 4.518±1.67 0.733±0.49 2.334±0.62
ENSMUST00000149288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025105 ENSMUST00000026096 1.109±0.64 0.062±0.05 0.410±0.06 0.089±0.09 0.106±0.03 0.199±0.11 0.313±0.04 0.043±0.02 0.119±0.10 1.063±0.33 0.008±0.00 2.141±0.83 0.569±0.47 0.443±0.22
ENSMUSG00000038623 ENSMUST00000041890 5.392±0.00 4.808±0.40 N/A N/A 9.288±3.09 1.905±0.27 2.009±0.00 2.026±0.65 N/A 9.289±2.37 N/A 7.973±1.43 N/A N/A
ENSMUST00000119543 13.796±2.00 N/A 8.272±0.00 N/A 14.675±8.30 N/A 5.552±0.78 4.660±1.50 3.861±2.88 14.875±2.96 3.028±0.59 18.485±0.00 2.952±1.31 3.686±0.10
ENSMUST00000124616 N/A N/A 2.005±0.00 N/A 2.588±0.00 0.801±0.00 N/A N/A 1.258±0.65 N/A 0.434±0.07 N/A 0.624±0.26 N/A
ENSMUST00000126334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130006 13.011±1.67 N/A N/A N/A 30.106±10.18 5.140±0.00 4.804±0.15 4.154±0.81 1.584±0.59 16.349±1.00 N/A N/A N/A N/A
ENSMUST00000134861 12.481±0.00 9.357±4.18 N/A N/A 14.268±3.25 4.500±1.17 N/A 3.546±0.60 0.798±0.14 12.900±2.99 N/A 9.623±1.80 N/A N/A
ENSMUST00000147977 3.265±0.18 N/A N/A N/A 4.115±0.95 1.339±0.00 N/A N/A N/A 5.015±0.80 N/A 4.854±0.22 N/A N/A
ENSMUSG00000052779 ENSMUST00000064826 N/A 0.078±0.02 N/A N/A 0.112±0.06 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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