C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hepatoma-derived growth factor-related protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000299633 HDGFRP3-001 ENSG00000166503 9606 - 15:83127753-83208018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299633
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299633 3.789±0.00 3.326±0.00 0.435±0.00 4.706±1.74 0.875±0.45 2.489±1.68 1.380±0.86 1.107±0.80 0.832±0.68 2.020±1.44 0.397±0.30 1.760±1.06 0.917±0.08 4.717±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001L6 CIL_0001L6_0001 CGP 15:83107407-83208018
CIL_00037Q CIL_00037Q_0001 CGP 15:83112738-83284716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008083 IEA growth factor activity
GO:0008283 NAS cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107305 Hdgfrp3-001 protein_coding Mus_musculus 0 2196
ENSMUST00000026094 Hdgfrp3-002 protein_coding Mus_musculus 0 1236
ENSMUST00000149288 Hdgfrp3-003 retained_intron Mus_musculus 0 719
ENSMUST00000130006 Tm6sf1-007 retained_intron Mus_musculus 0 263
ENSMUST00000119543 Tm6sf1-005 protein_coding Mus_musculus 0 263
ENSMUST00000126334 Tm6sf1-002 nonsense_mediated_decay Mus_musculus 0 263
ENSMUST00000041890 Tm6sf1-001 protein_coding Mus_musculus 0 263
ENSMUST00000002911 Hdgfrp2-201 protein_coding Mus_musculus 6e-35 156

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