C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cation channel, sperm associated 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166762 CATSPER2 9606 - 15:43628503-43668118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000321596 CATSPER2-002 43630674-43648826 protein_coding
  ENST00000381761 CATSPER2-004 43630562-43648848 protein_coding
  ENST00000396879 CATSPER2-001 43628503-43648844 protein_coding
  ENST00000409481 CATSPER2-010 43647420-43668118 protein_coding
  ENST00000415968 CATSPER2-005 43639422-43648847 retained_intron
  ENST00000419262 CATSPER2-008 43632199-43635392 nonsense_mediated_decay
  ENST00000432420 CATSPER2-009 43647374-43648825 protein_coding
  ENST00000433380 CATSPER2-003 43630608-43648061 nonsense_mediated_decay
  ENST00000450810 CATSPER2-013 43630571-43632737 nonsense_mediated_decay
  ENST00000464721 CATSPER2-012 43647349-43667702 processed_transcript
  ENST00000469461 CATSPER2-006 43630562-43648877 retained_intron
  ENST00000472960 CATSPER2-007 43632271-43633219 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321596ENST00000396879ENST00000409481ENST00000415968ENST00000432420ENST00000433380ENST00000450810ENST00000464721ENST00000469461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.643±0.00
ENST00000396879 N/A N/A N/A 0.154±0.00 0.174±0.07 0.260±0.00 N/A N/A N/A 0.096±0.01 N/A 0.203±0.02 0.063±0.00 5.849±0.00
ENST00000409481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A
ENST00000415968 0.173±0.00 N/A N/A 0.534±0.00 0.361±0.14 0.287±0.01 N/A N/A 0.166±0.00 0.253±0.00 N/A 0.358±0.00 N/A N/A
ENST00000432420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.331±0.05 N/A
ENST00000433380 N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.052±0.00 N/A 0.031±0.00 N/A
ENST00000450810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A
ENST00000464721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A
ENST00000469461 0.077±0.00 0.919±0.00 0.278±0.00 0.631±0.05 0.455±0.08 0.258±0.14 0.082±0.02 0.367±0.15 0.094±0.03 0.248±0.02 0.046±0.00 0.541±0.07 0.056±0.02 6.981±5.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005227 IEA calcium activated cation channel activity
GO:0005244 IEA voltage-gated ion channel activity
GO:0005245 IBA voltage-gated calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 TAS single fertilization
GO:0016020 IEA membrane
GO:0030154 IEA cell differentiation
GO:0030317 IEA:IBA sperm motility
GO:0031514 IEA motile cilium
GO:0032504 TAS multicellular organism reproduction
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035036 TAS sperm-egg recognition
GO:0036128 IEA:ISS CatSper complex
GO:0055085 IEA transmembrane transport
GO:0070509 IBA calcium ion import
GO:0070588 IEA calcium ion transmembrane transport
GO:0086010 IBA membrane depolarization during action potential
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000033486 Catsper2 cation channel, sperm associated 2 protein_coding Mus_musculus

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