C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000682_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000242866-ENSG00000166762 CGP 9606 15:43599398-43668118
GeneTranscriptPositionBiotype
ENSG00000166762 (CATSPER2)
cation channel, sperm associated 2 		ENST00000321596 (CATSPER2-002) 43630674-43648826 protein_coding
ENST00000381761 (CATSPER2-004) 43630562-43648848 protein_coding
ENST00000396879 (CATSPER2-001) 43628503-43648844 protein_coding
ENST00000409481 (CATSPER2-010) 43647420-43668118 protein_coding
ENST00000415968 (CATSPER2-005) 43639422-43648847 retained_intron
ENST00000419262 (CATSPER2-008) 43632199-43635392 nonsense_mediated_decay
ENST00000432420 (CATSPER2-009) 43647374-43648825 protein_coding
ENST00000433380 (CATSPER2-003) 43630608-43648061 nonsense_mediated_decay
ENST00000450810 (CATSPER2-013) 43630571-43632737 nonsense_mediated_decay
ENST00000464721 (CATSPER2-012) 43647349-43667702 processed_transcript
ENST00000469461 (CATSPER2-006) 43630562-43648877 retained_intron
ENST00000472960 (CATSPER2-007) 43632271-43633219 retained_intron
ENSG00000222398 (RNU6-554P)
RNA, U6 small nuclear 554, pseudogene 		ENST00000410466 (RNU6-554P-201) 43602543-43602648 snRNA
ENSG00000224677 (PDIA3P2)
protein disulfide isomerase family A, member 3 pseudogene 2 		ENST00000428073 (PDIA3P2-001) 43649123-43649280 unprocessed_pseudogene
ENSG00000242866 (STRC)
stereocilin 		ENST00000428650 (STRC-011) 43599633-43618798 nonsense_mediated_decay
ENST00000432436 (STRC-005) 43615127-43618240 protein_coding
ENST00000440125 (STRC-012) 43599633-43618798 nonsense_mediated_decay
ENST00000448437 (STRC-003) 43599602-43613187 retained_intron
ENST00000450892 (STRC-001) 43599398-43618800 protein_coding
ENST00000455136 (STRC-006) 43604704-43613235 nonsense_mediated_decay
ENST00000460952 (STRC-007) 43600563-43601675 retained_intron
ENST00000470279 (STRC-009) 43611199-43613020 retained_intron
ENST00000471703 (STRC-002) 43599590-43613105 retained_intron
ENST00000483250 (STRC-008) 43611194-43613025 retained_intron
ENST00000485556 (STRC-004) 43599602-43613214 retained_intron
ENST00000493750 (STRC-010) 43600999-43603582 retained_intron
ENST00000541030 (STRC-201) 43599563-43618800 protein_coding
ENSG00000249839 (AC011330.5)
 ENST00000510070 (AC011330.5-001) 43663654-43684339 unprocessed_pseudogene
ENSG00000275601 (AC011330.13)
 ENST00000621680 (AC011330.13-001) 43642389-43643023 sense_intronic
CIL_000682_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033498-ENSMUSG00000033486 CGP 10090 2:121363728-121413792
GeneTranscriptPositionBiotype
ENSMUSG00000000308 (Ckmt1)
creatine kinase, mitochondrial 1, ubiquitous 		ENSMUST00000000317 (Ckmt1-002) 121358610-121363737 protein_coding
ENSMUST00000078222 (Ckmt1-001) 121357776-121363737 protein_coding
ENSMUST00000125221 (Ckmt1-007) 121357840-121359777 protein_coding
ENSMUST00000125812 (Ckmt1-010) 121357714-121360040 protein_coding
ENSMUST00000126130 (Ckmt1-005) 121358656-121360985 nonsense_mediated_decay
ENSMUST00000128612 (Ckmt1-008) 121358844-121360019 nonsense_mediated_decay
ENSMUST00000129130 (Ckmt1-009) 121358666-121360627 protein_coding
ENSMUST00000145380 (Ckmt1-003) 121358659-121360361 retained_intron
ENSMUST00000150271 (Ckmt1-004) 121357907-121360988 protein_coding
ENSMUST00000153040 (Ckmt1-006) 121362918-121363736 retained_intron
ENSMUSG00000027248 (Pdia3)
protein disulfide isomerase associated 3 		ENSMUST00000028683 (Pdia3-001) 121413775-121438687 protein_coding
ENSMUST00000130450 (Pdia3-002) 121424630-121432136 retained_intron
ENSMUST00000135079 (Pdia3-004) 121414108-121433700 nonsense_mediated_decay
ENSMUST00000153378 (Pdia3-003) 121413883-121424601 processed_transcript
ENSMUSG00000033486 (Catsper2)
cation channel, sperm associated 2 		ENSMUST00000038073 (Catsper2-001) 121394355-121413792 protein_coding
ENSMUST00000123982 (Catsper2-005) 121410226-121412290 retained_intron
ENSMUST00000146521 (Catsper2-004) 121394357-121397455 retained_intron
ENSMUST00000154604 (Catsper2-002) 121392631-121413609 nonsense_mediated_decay
ENSMUSG00000033498 (Strc)
stereocilin 		ENSMUST00000038389 (Strc-001) 121363728-121380940 protein_coding
ENSMUST00000129136 (Strc-004) 121368403-121375031 nonsense_mediated_decay
ENSMUST00000134443 (Strc-003) 121372886-121375015 processed_transcript
ENSMUST00000149219 (Strc-002) 121376344-121387168 retained_intron
ENSMUST00000150332 (Strc-005) 121372965-121374789 retained_intron
ENSMUSG00000082651 (Gm14001)
predicted gene 14001 		ENSMUST00000118847 (Gm14001-001) 121401145-121401391 processed_pseudogene
ENSMUSG00000084140 (Gm14000)
predicted gene 14000 		ENSMUST00000118670 (Gm14000-001) 121405241-121405473 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000682_0001ENSG00000166762ENST00000321596ENST00000396879ENST00000409481ENST00000415968ENST00000432420ENST00000433380ENST00000450810ENST00000464721ENST00000469461ENSG00000222398ENST00000410466ENSG00000224677ENST00000428073ENSG00000242866ENST00000428650ENST00000432436ENST00000440125ENST00000448437ENST00000460952ENST00000471703ENST00000485556ENST00000493750ENST00000541030ENSG00000249839ENST00000510070ENSG00000275601ENST00000621680CIL_000682_0002ENSMUSG00000000308ENSMUST00000000317ENSMUST00000078222ENSMUST00000125221ENSMUST00000125812ENSMUST00000126130ENSMUST00000129130ENSMUST00000145380ENSMUST00000150271ENSMUST00000153040ENSMUSG00000027248ENSMUST00000028683ENSMUST00000153378ENSMUSG00000033486ENSMUST00000038073ENSMUSG00000033498ENSMUST00000038389ENSMUST00000129136ENSMUST00000149219ENSMUSG00000082651ENSMUST00000118847ENSMUSG00000084140ENSMUST00000118670
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166762 ENST00000321596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.643±0.00
ENST00000381761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396879 N/A N/A N/A 0.154±0.00 0.174±0.07 0.260±0.00 N/A N/A N/A 0.096±0.01 N/A 0.203±0.02 0.063±0.00 5.849±0.00
ENST00000409481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A
ENST00000415968 0.173±0.00 N/A N/A 0.534±0.00 0.361±0.14 0.287±0.01 N/A N/A 0.166±0.00 0.253±0.00 N/A 0.358±0.00 N/A N/A
ENST00000419262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.331±0.05 N/A
ENST00000433380 N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A 0.052±0.00 N/A 0.031±0.00 N/A
ENST00000450810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A
ENST00000464721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A
ENST00000469461 0.077±0.00 0.919±0.00 0.278±0.00 0.631±0.05 0.455±0.08 0.258±0.14 0.082±0.02 0.367±0.15 0.094±0.03 0.248±0.02 0.046±0.00 0.541±0.07 0.056±0.02 6.981±5.93
ENST00000472960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222398 ENST00000410466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.667±0.00
ENSG00000224677 ENST00000428073 N/A 0.304±0.00 N/A N/A N/A N/A N/A N/A N/A 10.797±0.00 N/A N/A N/A N/A
ENSG00000242866 ENST00000428650 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A
ENST00000432436 N/A N/A N/A N/A N/A N/A N/A 0.199±0.00 N/A N/A N/A 0.120±0.00 N/A N/A
ENST00000440125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.353±0.00
ENST00000448437 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A N/A N/A 0.105±0.00
ENST00000450892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.932±0.00
ENST00000470279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.373±0.28
ENST00000483250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485556 0.009±0.00 0.225±0.00 N/A N/A N/A N/A 0.036±0.00 0.076±0.00 0.015±0.00 0.036±0.00 N/A 0.012±0.00 N/A 0.429±0.33
ENST00000493750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.041±0.00
ENST00000541030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00
ENSG00000249839 ENST00000510070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENSG00000275601 ENST00000621680 0.644±0.00 0.631±0.00 0.163±0.00 1.155±0.35 0.804±0.29 0.667±0.33 0.182±0.11 1.737±0.00 1.497±0.00 0.327±0.14 0.457±0.00 1.066±0.87 0.299±0.16 1.097±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000308 ENSMUST00000000317 3.940±0.36 2.125±0.70 N/A 60.769±64.77 2.136±0.98 202.639±13.32 0.767±0.00 N/A 0.130±0.06 3.162±1.06 N/A 2.606±0.67 1.011±0.66 0.156±0.08
ENSMUST00000078222 2.631±1.71 N/A 27.389±2.91 N/A 1.198±0.23 784.611±67.77 1.100±0.46 47.934±1.76 0.306±0.29 14.273±0.75 0.104±0.00 3.981±1.66 0.556±0.29 0.256±0.17
ENSMUST00000125221 N/A 5.606±0.73 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125812 0.116±0.00 1.374±0.47 N/A N/A 1.154±0.00 250.372±8.59 0.830±0.17 N/A 0.113±0.09 N/A N/A 3.369±0.00 N/A N/A
ENSMUST00000126130 N/A 1.278±0.22 N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A 1.725±0.00 N/A
ENSMUST00000128612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129130 N/A N/A N/A 308.807±0.00 N/A N/A N/A N/A N/A N/A N/A 3.368±0.00 1.647±0.43 N/A
ENSMUST00000145380 N/A 1.962±0.17 N/A N/A 2.256±0.35 480.580±176.44 N/A N/A 0.190±0.00 4.757±0.00 N/A 4.056±0.84 N/A 0.169±0.00
ENSMUST00000150271 2.753±0.00 N/A N/A 107.561±0.00 1.581±0.00 387.254±12.52 0.730±0.14 N/A 0.156±0.10 7.205±1.32 0.149±0.00 2.953±1.37 1.546±0.00 N/A
ENSMUST00000153040 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A 0.222±0.00 N/A 0.217±0.06 3.354±0.74 1.696±0.10 N/A
ENSMUSG00000027248 ENSMUST00000028683 18.941±2.13 52.649±1.94 75.262±9.99 52.058±12.66 33.124±21.54 65.343±5.62 7.799±2.20 18.994±4.99 53.198±35.84 24.722±15.31 8.115±1.09 119.512±59.84 336.614±158.09 37.642±4.99
ENSMUST00000130450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153378 101.013±38.98 377.881±100.04 N/A N/A 184.444±77.83 257.938±40.02 20.913±3.48 110.577±30.56 69.460±9.73 127.651±53.88 N/A 612.075±100.33 N/A N/A
ENSMUSG00000033486 ENSMUST00000038073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 59.475±32.26
ENSMUST00000123982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033498 ENSMUST00000038389 0.044±0.02 N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A 0.025±0.01 0.357±0.08 0.037±0.00 0.035±0.00
ENSMUST00000129136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A
ENSMUST00000134443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.096±0.04
ENSMUST00000150332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082651 ENSMUST00000118847 0.833±0.24 N/A 0.704±0.34 6.757±6.35 N/A 0.952±0.00 N/A N/A 0.240±0.11 N/A 0.447±0.00 6.324±5.27 6.481±6.34 11.755±15.27
ENSMUSG00000084140 ENSMUST00000118670 N/A N/A N/A 0.588±0.32 2.968±1.80 1.819±0.67 0.769±0.17 0.568±0.00 1.089±0.17 0.855±0.00 0.537±0.00 2.965±2.22 2.605±2.95 1.882±0.85

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