C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serum amyloid A-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166788 SAAL1 9606 - 11:18069935-18106091 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000300013 SAAL1-003 18080344-18106082 protein_coding
  ENST00000524803 SAAL1-001 18080292-18106091 protein_coding
  ENST00000528002 SAAL1-009 18089496-18090936 retained_intron
  ENST00000529318 SAAL1-002 18080373-18106087 protein_coding
  ENST00000530180 SAAL1-007 18089438-18106069 protein_coding
  ENST00000530237 SAAL1-014 18080348-18081737 retained_intron
  ENST00000530436 SAAL1-012 18080345-18090274 protein_coding
  ENST00000530736 SAAL1-005 18093800-18106085 processed_transcript
  ENST00000531216 SAAL1-010 18083215-18087206 retained_intron
  ENST00000531581 SAAL1-004 18080345-18106087 nonsense_mediated_decay
  ENST00000531751 SAAL1-008 18080345-18092324 protein_coding
  ENST00000532403 SAAL1-015 18069935-18081435 processed_transcript
  ENST00000532452 SAAL1-011 18080349-18106019 protein_coding
  ENST00000533851 SAAL1-006 18089352-18106071 processed_transcript
  ENST00000534721 SAAL1-013 18080345-18086960 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000300013ENST00000524803ENST00000528002ENST00000530180ENST00000530237ENST00000530436ENST00000530736ENST00000531216ENST00000531751ENST00000533851ENST00000534721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000300013 0.712±0.00 1.725±0.00 0.471±0.00 0.241±0.00 0.908±0.00 N/A 0.721±0.00 0.830±0.00 1.653±0.00 0.646±0.00 N/A 1.075±0.43 0.819±0.41 5.062±1.17
ENST00000524803 1.567±0.00 3.270±0.00 0.551±0.00 0.648±0.00 1.043±0.00 1.627±0.19 0.594±0.34 1.416±0.00 1.840±0.00 1.769±0.00 1.047±0.00 2.271±0.37 3.054±0.65 3.410±0.00
ENST00000528002 N/A N/A 0.757±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530180 N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000530237 N/A 3.295±0.00 N/A 2.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530436 N/A N/A N/A N/A N/A 1.612±0.00 N/A N/A N/A 2.238±0.00 N/A 1.151±0.00 N/A N/A
ENST00000530736 N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000531216 N/A N/A N/A N/A N/A N/A N/A 0.413±0.00 N/A 0.497±0.00 N/A N/A N/A N/A
ENST00000531751 N/A N/A N/A N/A 0.973±0.00 N/A 0.503±0.00 2.440±0.00 N/A N/A 0.822±0.00 N/A 1.629±0.00 N/A
ENST00000533851 1.368±0.00 N/A N/A N/A 0.791±0.00 1.996±0.00 0.395±0.00 N/A N/A N/A 1.755±0.00 2.591±0.00 N/A N/A
ENST00000534721 N/A N/A N/A N/A N/A N/A N/A 1.290±0.00 N/A N/A N/A 1.927±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00041A CIL_00041A_0002 CGP 11:18017564-18106091

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018681 saal1 serum amyloid A-like 1 protein_coding Danio_rerio
ENSMUSG00000006763 Saal1 serum amyloid A-like 1 protein_coding Mus_musculus

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