C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000029432-ENSDARG00000018681 CGP 7955 25:8402878-8465457
GeneTranscriptPositionBiotype
ENSDARG00000018681 (saal1)
serum amyloid A-like 1 		ENSDART00000006579 (saal1-201) 8444015-8465457 protein_coding
ENSDARG00000029432 (tph1a)
tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a 		ENSDART00000041676 (tph1a-201) 8402884-8423475 protein_coding
ENSDART00000067159 (tph1a-202) 8402878-8423475 protein_coding
CIL_00041A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129167-ENSG00000166788 CGP 9606 11:18017564-18106091
GeneTranscriptPositionBiotype
ENSG00000129167 (TPH1)
tryptophan hydroxylase 1 		ENST00000250018 (TPH1-001) 18017564-18041325 protein_coding
ENST00000417164 (TPH1-002) 18020991-18040762 nonsense_mediated_decay
ENST00000525406 (TPH1-003) 18021077-18023169 processed_transcript
ENST00000528338 (TPH1-004) 18029515-18042426 protein_coding
ENSG00000166788 (SAAL1)
serum amyloid A-like 1 		ENST00000300013 (SAAL1-003) 18080344-18106082 protein_coding
ENST00000524803 (SAAL1-001) 18080292-18106091 protein_coding
ENST00000528002 (SAAL1-009) 18089496-18090936 retained_intron
ENST00000529318 (SAAL1-002) 18080373-18106087 protein_coding
ENST00000530180 (SAAL1-007) 18089438-18106069 protein_coding
ENST00000530237 (SAAL1-014) 18080348-18081737 retained_intron
ENST00000530436 (SAAL1-012) 18080345-18090274 protein_coding
ENST00000530736 (SAAL1-005) 18093800-18106085 processed_transcript
ENST00000531216 (SAAL1-010) 18083215-18087206 retained_intron
ENST00000531581 (SAAL1-004) 18080345-18106087 nonsense_mediated_decay
ENST00000531751 (SAAL1-008) 18080345-18092324 protein_coding
ENST00000532403 (SAAL1-015) 18069935-18081435 processed_transcript
ENST00000532452 (SAAL1-011) 18080349-18106019 protein_coding
ENST00000533851 (SAAL1-006) 18089352-18106071 processed_transcript
ENST00000534721 (SAAL1-013) 18080345-18086960 processed_transcript
CIL_00041A_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040046-ENSMUSG00000006763 CGP 10090 7:46647130-46710680
GeneTranscriptPositionBiotype
ENSMUSG00000006763 (Saal1)
serum amyloid A-like 1 		ENSMUST00000006948 (Saal1-004) 46689304-46710641 retained_intron
ENSMUST00000131747 (Saal1-005) 46689269-46708917 retained_intron
ENSMUST00000142381 (Saal1-003) 46691816-46710658 retained_intron
ENSMUST00000143082 (Saal1-001) 46686108-46710680 protein_coding
ENSMUST00000145813 (Saal1-002) 46692238-46710661 retained_intron
ENSMUST00000146316 (Saal1-006) 46689306-46689897 processed_transcript
ENSMUSG00000040046 (Tph1)
tryptophan hydroxylase 1 		ENSMUST00000049298 (Tph1-002) 46647161-46672537 protein_coding
ENSMUST00000107669 (Tph1-001) 46647130-46667377 protein_coding
ENSMUST00000110264 (Tph1-007) 46649741-46651419 retained_intron
ENSMUST00000163468 (Tph1-004) 46660020-46662315 retained_intron
ENSMUST00000168335 (Tph1-003) 46660338-46667343 protein_coding
ENSMUST00000170045 (Tph1-008) 46656862-46660668 retained_intron
ENSMUST00000170251 (Tph1-005) 46647426-46665301 nonsense_mediated_decay
ENSMUST00000172386 (Tph1-006) 46647426-46665288 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041A_0001ENSDARG00000018681ENSDART00000006579ENSDARG00000029432ENSDART00000041676ENSDART00000067159CIL_00041A_0002ENSG00000129167ENST00000250018ENST00000417164ENST00000525406ENST00000528338ENSG00000166788ENST00000300013ENST00000524803ENST00000528002ENST00000529318ENST00000530180ENST00000530237ENST00000530436ENST00000530736ENST00000531216ENST00000531581ENST00000531751ENST00000532403ENST00000532452ENST00000533851ENST00000534721CIL_00041A_0003ENSMUSG00000006763ENSMUST00000006948ENSMUST00000131747ENSMUST00000142381ENSMUST00000143082ENSMUST00000145813ENSMUST00000146316ENSMUSG00000040046ENSMUST00000049298ENSMUST00000107669ENSMUST00000110264ENSMUST00000163468ENSMUST00000168335ENSMUST00000170045ENSMUST00000170251ENSMUST00000172386
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041A_0001ENSDARG00000018681ENSDART00000006579ENSDARG00000029432ENSDART00000041676ENSDART00000067159CIL_00041A_0002ENSG00000129167ENST00000250018ENSG00000166788ENST00000300013ENST00000524803ENST00000528002ENST00000530180ENST00000530237ENST00000530436ENST00000530736ENST00000531216ENST00000531751ENST00000533851ENST00000534721CIL_00041A_0003ENSMUSG00000006763ENSMUST00000006948ENSMUST00000131747ENSMUST00000142381ENSMUST00000143082ENSMUST00000145813ENSMUSG00000040046ENSMUST00000049298ENSMUST00000107669ENSMUST00000168335ENSMUST00000170045ENSMUST00000170251ENSMUST00000172386
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018681 ENSDART00000006579 N/A N/A N/A 0.679±0.49 N/A N/A 2.198±0.42 2.101±1.08 0.220±0.00 N/A 0.637±0.00 N/A N/A N/A
ENSDARG00000029432 ENSDART00000041676 N/A N/A N/A 1.924±1.40 N/A N/A 0.203±0.19 1.272±0.04 0.148±0.00 N/A 0.114±0.00 N/A N/A N/A
ENSDART00000067159 N/A N/A N/A 0.096±0.05 N/A N/A 0.071±0.04 N/A 0.026±0.00 N/A 0.113±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129167 ENST00000250018 N/A N/A 0.190±0.00 N/A 0.444±0.00 2.511±0.00 N/A N/A N/A 0.193±0.00 N/A 0.527±0.00 N/A 0.441±0.00
ENST00000417164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000166788 ENST00000300013 0.712±0.00 1.725±0.00 0.471±0.00 0.241±0.00 0.908±0.00 N/A 0.721±0.00 0.830±0.00 1.653±0.00 0.646±0.00 N/A 1.075±0.43 0.819±0.41 5.062±1.17
ENST00000524803 1.567±0.00 3.270±0.00 0.551±0.00 0.648±0.00 1.043±0.00 1.627±0.19 0.594±0.34 1.416±0.00 1.840±0.00 1.769±0.00 1.047±0.00 2.271±0.37 3.054±0.65 3.410±0.00
ENST00000528002 N/A N/A 0.757±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530180 N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000530237 N/A 3.295±0.00 N/A 2.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530436 N/A N/A N/A N/A N/A 1.612±0.00 N/A N/A N/A 2.238±0.00 N/A 1.151±0.00 N/A N/A
ENST00000530736 N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000531216 N/A N/A N/A N/A N/A N/A N/A 0.413±0.00 N/A 0.497±0.00 N/A N/A N/A N/A
ENST00000531581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531751 N/A N/A N/A N/A 0.973±0.00 N/A 0.503±0.00 2.440±0.00 N/A N/A 0.822±0.00 N/A 1.629±0.00 N/A
ENST00000532403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533851 1.368±0.00 N/A N/A N/A 0.791±0.00 1.996±0.00 0.395±0.00 N/A N/A N/A 1.755±0.00 2.591±0.00 N/A N/A
ENST00000534721 N/A N/A N/A N/A N/A N/A N/A 1.290±0.00 N/A N/A N/A 1.927±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006763 ENSMUST00000006948 N/A N/A 0.979±0.02 0.926±0.00 N/A N/A N/A N/A 1.081±0.56 N/A 0.481±0.08 2.562±1.20 1.936±0.72 2.287±1.40
ENSMUST00000131747 1.310±0.68 1.024±0.13 0.751±0.23 1.426±0.18 1.357±0.56 0.858±0.18 0.304±0.05 0.469±0.06 0.656±0.25 0.728±0.22 0.224±0.05 1.961±0.59 0.613±0.16 0.855±0.26
ENSMUST00000142381 2.613±1.16 2.799±0.47 1.516±0.47 1.627±0.00 2.836±0.79 4.400±1.08 0.399±0.14 2.145±0.66 1.852±0.82 2.717±0.95 0.278±0.06 6.166±2.83 1.450±1.08 3.780±1.60
ENSMUST00000143082 1.202±0.54 0.649±0.13 1.092±0.13 2.096±0.28 1.074±0.19 0.517±0.12 0.325±0.04 0.709±0.16 0.532±0.36 0.721±0.06 0.261±0.07 1.555±0.66 0.800±0.42 0.746±0.22
ENSMUST00000145813 N/A 0.385±0.05 N/A N/A 0.471±0.00 N/A 0.141±0.05 N/A N/A 0.359±0.00 N/A N/A N/A N/A
ENSMUST00000146316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040046 ENSMUST00000049298 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.641±0.18 0.027±0.00 N/A N/A
ENSMUST00000107669 0.046±0.03 0.058±0.00 0.009±0.00 0.096±0.01 0.398±0.27 2.684±0.77 N/A 0.019±0.00 0.016±0.00 N/A 0.414±0.19 0.077±0.04 0.528±0.58 N/A
ENSMUST00000110264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168335 N/A N/A N/A N/A N/A N/A 0.120±0.10 N/A N/A 0.232±0.00 N/A 0.072±0.00 1.669±0.00 0.078±0.00
ENSMUST00000170045 N/A N/A N/A N/A 0.388±0.00 N/A 0.089±0.00 0.096±0.00 N/A N/A N/A 0.740±0.00 N/A 0.205±0.00
ENSMUST00000170251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.060±0.00
ENSMUST00000172386 N/A N/A 0.043±0.01 N/A 0.063±0.00 N/A 0.045±0.00 N/A N/A N/A N/A 0.122±0.03 0.024±0.00 0.032±0.00

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