C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167037 SGSM1 9606 + 22:24806169-24927578 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000400358 SGSM1-001 24806269-24927578 protein_coding
  ENST00000400359 SGSM1-004 24806319-24925137 protein_coding
  ENST00000470591 SGSM1-005 24806307-24814192 processed_transcript
  ENST00000473458 SGSM1-002 24843460-24925137 retained_intron
  ENST00000480523 SGSM1-003 24844741-24924593 retained_intron
  ENST00000610372 SGSM1-201 24806169-24926844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000400358ENST00000400359ENST00000473458ENST00000480523ENST00000610372
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000400358 0.070±0.00 N/A N/A 0.740±0.00 N/A 0.152±0.00 0.095±0.00 N/A N/A N/A N/A 0.329±0.13 0.110±0.00 N/A
ENST00000400359 N/A N/A N/A 0.698±0.00 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473458 0.014±0.00 N/A 0.124±0.00 N/A 0.063±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480523 N/A N/A N/A 1.224±0.00 N/A 0.333±0.00 0.294±0.00 N/A 0.493±0.00 N/A 0.087±0.00 N/A N/A N/A
ENST00000610372 N/A 0.484±0.00 0.570±0.00 3.758±1.57 0.526±0.00 0.757±0.67 1.082±1.03 0.824±0.00 0.033±0.00 0.531±0.00 0.155±0.09 0.875±0.26 0.198±0.08 1.662±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0001 VISTA 22:24783488-25386391

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028857 SGSM1 (1 of 2) small G protein signaling modulator 1 protein_coding Danio_rerio
ENSDARG00000075376 SGSM1 (2 of 2) small G protein signaling modulator 1 protein_coding Danio_rerio
ENSMUSG00000042216 Sgsm1 small G protein signaling modulator 1 protein_coding Mus_musculus

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