C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480523 SGSM1-003 ENSG00000167037 9606 + 22:24844741-24924593 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverMuscleENST00000480523
Transcript ID Brain Colon Heart Liver Muscle
ENST00000480523 1.224±0.00 0.333±0.00 0.294±0.00 0.493±0.00 0.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0001 VISTA 22:24783488-25386391

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048112 Sgsm1-001 protein_coding Mus_musculus 0 3531
ENSMUST00000145708 Sgsm1-002 processed_transcript Mus_musculus 0 3005
ENSMUST00000057209 Sgsm1-004 protein_coding Mus_musculus 0 2531
ENSMUST00000112325 Sgsm1-003 protein_coding Mus_musculus 0 2231
ENSMUST00000147856 Sgsm1-005 processed_transcript Mus_musculus 0 2004
ENSMUST00000154248 Sgsm1-010 protein_coding Mus_musculus 0 1389
ENSMUST00000112324 Sgsm1-006 protein_coding Mus_musculus 0 614
ENSDART00000060946 SGSM1 (2 of 2)-201 protein_coding Danio_rerio 0 601
ENSDART00000142278 SGSM1 (2 of 2)-001 protein_coding Danio_rerio 0 601
ENSMUST00000140981 Sgsm1-007 retained_intron Mus_musculus 0 510
ENSDART00000092357 SGSM2-001 protein_coding Danio_rerio 0 472

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