C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: small G protein signaling modulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610372 SGSM1-201 ENSG00000167037 9606 + 22:24806169-24926844 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000610372
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000610372 0.484±0.00 0.570±0.00 3.758±1.57 0.526±0.00 0.757±0.67 1.082±1.03 0.824±0.00 0.033±0.00 0.531±0.00 0.155±0.09 0.875±0.26 0.198±0.08 1.662±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0001 VISTA 22:24783488-25386391

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0032313 IEA regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154248 Sgsm1-010 protein_coding Mus_musculus 0 2076
ENSMUST00000112325 Sgsm1-003 protein_coding Mus_musculus 0 1469
ENSMUST00000145708 Sgsm1-002 processed_transcript Mus_musculus 0 1469
ENSMUST00000048112 Sgsm1-001 protein_coding Mus_musculus 0 1469
ENSMUST00000057209 Sgsm1-004 protein_coding Mus_musculus 0 1406
ENSMUST00000147856 Sgsm1-005 processed_transcript Mus_musculus 0 880
ENSDART00000060946 SGSM1 (2 of 2)-201 protein_coding Danio_rerio 0 601
ENSDART00000142278 SGSM1 (2 of 2)-001 protein_coding Danio_rerio 0 601
ENSMUST00000140981 Sgsm1-007 retained_intron Mus_musculus 0 588
ENSDART00000092357 SGSM2-001 protein_coding Danio_rerio 0 472
ENSMUST00000112324 Sgsm1-006 protein_coding Mus_musculus 0 390

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