C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxia, cerebellar, Cayman type
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167654 ATCAY 9606 + 19:3879864-3928079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000450849 ATCAY-001 3880583-3928079 protein_coding
  ENST00000595916 ATCAY-006 3880685-3893669 processed_transcript
  ENST00000597739 ATCAY-002 3880685-3924997 nonsense_mediated_decay
  ENST00000598136 ATCAY-005 3879864-3905595 protein_coding
  ENST00000600960 ATCAY-004 3885768-3926316 protein_coding
  ENST00000601323 ATCAY-009 3925283-3926316 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450849ENST00000597739ENST00000600960ENST00000601323
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450849 0.067±0.00 0.244±0.00 14.284±0.00 0.068±0.02 0.141±0.11 0.113±0.00 0.198±0.00 0.060±0.03 0.125±0.00 0.019±0.00 0.031±0.02 0.031±0.00 0.442±0.00
ENST00000597739 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.317±0.00 N/A 0.024±0.00 N/A
ENST00000600960 0.032±0.00 0.132±0.00 6.124±0.00 0.133±0.00 0.016±0.00 0.067±0.00 N/A 0.025±0.00 0.091±0.05 0.116±0.00 N/A N/A 0.088±0.00
ENST00000601323 N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QQ CIL_0005QQ_0002 CGP 19:3804024-3928079
CIL_0005QT CIL_0005QT_0003 CGP 19:3879864-3942416

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006810 IEA transport
GO:0006915 IBA apoptotic process
GO:0019894 IPI kinesin binding
GO:0030054 IEA cell junction
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0031175 ISS neuron projection development
GO:0031966 ISS mitochondrial membrane
GO:0032880 IDA regulation of protein localization
GO:0043005 IDA neuron projection
GO:0045202 ISS synapse
GO:0048311 ISS mitochondrion distribution
GO:2000212 IDA negative regulation of glutamate metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059781 atcayb ataxia, cerebellar, Cayman type b protein_coding Danio_rerio
ENSDARG00000071678 atcaya ataxia, cerebellar, Cayman type a protein_coding Danio_rerio
ENSDARG00000071682 atcaya ataxia, cerebellar, Cayman type a protein_coding Danio_rerio
ENSMUSG00000034958 Atcay ataxia, cerebellar, Cayman type homolog (human) protein_coding Mus_musculus

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