C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxia, cerebellar, Cayman type
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450849 ATCAY-001 ENSG00000167654 9606 + 19:3880583-3928079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000450849
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000450849 0.067±0.00 0.244±0.00 14.284±0.00 0.068±0.02 0.141±0.11 0.113±0.00 0.198±0.00 0.060±0.03 0.125±0.00 0.019±0.00 0.031±0.02 0.031±0.00 0.442±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QQ CIL_0005QQ_0002 CGP 19:3804024-3928079
CIL_0005QT CIL_0005QT_0003 CGP 19:3879864-3942416

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006810 IEA transport
GO:0006915 IBA apoptotic process
GO:0019894 IPI kinesin binding
GO:0030054 IEA cell junction
GO:0030424 ISS axon
GO:0030425 ISS dendrite
GO:0031175 ISS neuron projection development
GO:0031966 ISS mitochondrial membrane
GO:0032880 IDA regulation of protein localization
GO:0043005 IDA neuron projection
GO:0045202 ISS synapse
GO:0048311 ISS mitochondrion distribution
GO:2000212 IDA negative regulation of glutamate metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047408 Atcay-001 protein_coding Mus_musculus 0.000007 58
ENSMUST00000146030 Atcay-002 nonsense_mediated_decay Mus_musculus 0.000007 58

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