C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 43 (amino acid system L transporter), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167703 SLC43A2 9606 - 17:1569267-1628886 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301335 SLC43A2-001 1569267-1628836 protein_coding
  ENST00000412517 SLC43A2-005 1575501-1605085 protein_coding
  ENST00000571376 SLC43A2-012 1591622-1627911 nonsense_mediated_decay
  ENST00000571650 SLC43A2-004 1574372-1628341 protein_coding
  ENST00000572135 SLC43A2-003 1585239-1628250 retained_intron
  ENST00000572801 SLC43A2-011 1590850-1628840 nonsense_mediated_decay
  ENST00000574274 SLC43A2-007 1590907-1605276 processed_transcript
  ENST00000574743 SLC43A2-002 1585239-1628886 retained_intron
  ENST00000575944 SLC43A2-006 1616366-1627799 retained_intron
  ENST00000576537 SLC43A2-010 1576603-1578705 retained_intron
  ENST00000576721 SLC43A2-008 1591440-1604944 nonsense_mediated_decay
  ENST00000576769 SLC43A2-009 1578254-1583698 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301335ENST00000412517ENST00000571650ENST00000572801ENST00000574274ENST00000574743
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301335 N/A 1.702±0.00 0.722±0.00 1.308±0.00 0.628±0.35 0.702±0.00 0.071±0.00 7.294±0.00 0.301±0.00 0.651±0.37 5.694±0.00 0.167±0.00 7.419±1.80 N/A
ENST00000412517 N/A N/A 4.897±0.00 1.111±0.00 5.315±0.00 1.138±0.00 0.621±0.00 0.257±0.00 1.304±0.00 N/A 0.860±0.00 2.839±0.96 69.980±0.00 N/A
ENST00000571650 11.099±0.00 7.556±0.00 N/A 2.566±1.51 8.327±0.00 5.707±0.00 0.518±0.34 14.548±0.00 0.844±0.00 10.508±0.00 6.346±6.19 5.649±0.50 121.476±46.80 2.859±1.53
ENST00000572801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.412±0.00
ENST00000574274 N/A N/A N/A N/A N/A N/A 0.523±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000574743 N/A N/A N/A N/A N/A N/A N/A 0.437±0.00 0.589±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060R CIL_00060R_0002 CGP 17:1517718-1628886

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006865 TAS amino acid transport
GO:0015179 IEA L-amino acid transmembrane transporter activity
GO:0015807 IEA L-amino acid transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport
GO:1902475 IEA L-alpha-amino acid transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036848 slc43a2a solute carrier family 43, member 2a protein_coding Danio_rerio
ENSDARG00000061120 slc43a2b solute carrier family 43, member 2b protein_coding Danio_rerio
ENSMUSG00000038178 Slc43a2 solute carrier family 43, member 2 protein_coding Mus_musculus

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