C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GH3 domain containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167925 GHDC 9606 - 17:42188799-42194532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301671 GHDC-006 42189088-42194195 protein_coding
  ENST00000414034 GHDC-002 42189088-42194494 protein_coding
  ENST00000428494 GHDC-201 42189090-42194532 protein_coding
  ENST00000585375 GHDC-010 42193189-42194494 retained_intron
  ENST00000585735 GHDC-012 42189943-42191070 retained_intron
  ENST00000586692 GHDC-011 42192931-42194513 processed_transcript
  ENST00000587427 GHDC-001 42189089-42194484 protein_coding
  ENST00000588352 GHDC-008 42192739-42194487 protein_coding
  ENST00000588762 GHDC-003 42192545-42194478 nonsense_mediated_decay
  ENST00000590249 GHDC-007 42192692-42194502 protein_coding
  ENST00000590520 GHDC-009 42192952-42194308 processed_transcript
  ENST00000593209 GHDC-005 42188799-42194459 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000301671ENST00000414034ENST00000585735ENST00000586692ENST00000587427ENST00000588352ENST00000590520ENST00000593209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000301671 N/A 2.685±0.00 N/A 0.857±0.61 N/A N/A 0.443±0.00 N/A N/A N/A N/A N/A N/A 1.007±0.00
ENST00000414034 N/A N/A N/A 1.209±0.00 0.828±0.00 N/A 0.686±0.00 N/A N/A 4.207±0.00 0.740±0.00 2.270±1.89 N/A 1.136±0.00
ENST00000585735 N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A N/A N/A N/A 1.290±0.00
ENST00000586692 N/A N/A 1.729±0.00 N/A N/A N/A N/A N/A N/A 1.308±0.00 N/A N/A N/A N/A
ENST00000587427 7.015±0.00 18.849±0.00 0.626±0.00 1.794±0.55 6.062±5.92 1.522±0.95 1.185±1.11 4.070±0.00 3.785±3.33 6.172±0.00 2.801±2.58 12.127±7.12 18.982±2.13 6.038±4.29
ENST00000588352 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A 1.877±0.00 N/A N/A
ENST00000590520 N/A N/A N/A N/A N/A N/A N/A 0.967±0.00 N/A N/A N/A N/A N/A N/A
ENST00000593209 N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A 1.673±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DQ CIL_0006DQ_0001 CGP 17:42184060-42194532
CIL_0000KW CIL_0000KW_0002 CGP 17:42188799-42276707

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055569 ghdc GH3 domain containing protein_coding Danio_rerio
ENSMUSG00000017747 Ghdc GH3 domain containing protein_coding Mus_musculus

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