C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000227503 SF1-002 ENSG00000168066 9606 - 11:64764606-64778747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000227503
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000227503 31.773±0.00 9.534±6.79 18.030±0.00 6.774±0.00 11.466±8.40 5.585±1.65 14.640±0.00 3.063±0.00 50.272±19.65 33.934±11.14 51.544±1.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 TAS transcription corepressor activity
GO:0003723 TAS:IEA RNA binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005840 NAS ribosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113489 Sf1-013 protein_coding Mus_musculus 0 2998
ENSMUST00000113487 Sf1-001 protein_coding Mus_musculus 0 2850
ENSMUST00000131252 Sf1-002 protein_coding Mus_musculus 0 2510
ENSMUST00000113488 Sf1-003 protein_coding Mus_musculus 0 2464
ENSMUST00000113485 Sf1-012 nonsense_mediated_decay Mus_musculus 0 1868
ENSMUST00000155973 Sf1-010 protein_coding Mus_musculus 0 1146
ENSMUST00000124667 Sf1-014 protein_coding Mus_musculus 0 1068
ENSMUST00000125516 Sf1-008 protein_coding Mus_musculus 0 708
ENSMUST00000162237 Sf1-015 protein_coding Mus_musculus 0 614
ENSMUST00000131083 Sf1-004 retained_intron Mus_musculus 0 327
ENSMUST00000146298 Sf1-005 retained_intron Mus_musculus 0 283

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