C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377390 SF1-005 ENSG00000168066 9606 - 11:64764606-64778730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377390
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377390 15.388±0.00 44.343±0.00 9.990±7.66 16.174±0.00 16.668±0.00 3.303±2.48 10.830±0.00 8.041±5.71 10.996±8.20 29.064±0.00 35.110±19.00 38.703±8.96 36.611±3.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 TAS transcription corepressor activity
GO:0003723 TAS:IEA RNA binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005840 NAS ribosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131252 Sf1-002 protein_coding Mus_musculus 0 3975
ENSMUST00000113485 Sf1-012 nonsense_mediated_decay Mus_musculus 0 3345
ENSMUST00000113488 Sf1-003 protein_coding Mus_musculus 0 2822
ENSMUST00000113489 Sf1-013 protein_coding Mus_musculus 0 2479
ENSMUST00000113487 Sf1-001 protein_coding Mus_musculus 0 2344
ENSMUST00000155973 Sf1-010 protein_coding Mus_musculus 0 1146
ENSMUST00000162237 Sf1-015 protein_coding Mus_musculus 0 835
ENSMUST00000124667 Sf1-014 protein_coding Mus_musculus 0 717
ENSMUST00000125516 Sf1-008 protein_coding Mus_musculus 0 708
ENSMUST00000131083 Sf1-004 retained_intron Mus_musculus 0 327
ENSMUST00000146298 Sf1-005 retained_intron Mus_musculus 0 283

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