C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, non-voltage-gated 1, beta subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168447 SCNN1B 9606 + 16:23278231-23381299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307331 SCNN1B-002 23303973-23380801 protein_coding
  ENST00000343070 SCNN1B-001 23302270-23381299 protein_coding
  ENST00000564275 SCNN1B-005 23348592-23380803 nonsense_mediated_decay
  ENST00000566441 SCNN1B-004 23355417-23372183 protein_coding
  ENST00000566647 SCNN1B-003 23358202-23359379 processed_transcript
  ENST00000566870 SCNN1B-009 23348795-23353244 retained_intron
  ENST00000568085 SCNN1B-006 23348592-23380803 protein_coding
  ENST00000568923 SCNN1B-007 23348592-23380803 protein_coding
  ENST00000569789 SCNN1B-008 23278231-23352913 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307331ENST00000343070ENST00000564275ENST00000566441ENST00000566647ENST00000566870ENST00000568085ENST00000568923
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307331 N/A N/A 1.321±0.00 N/A N/A N/A 0.122±0.00 N/A 0.822±0.00 0.336±0.00 N/A N/A N/A N/A
ENST00000343070 59.498±0.00 2.967±0.00 N/A N/A 1.769±0.00 4.557±3.32 N/A 13.343±0.00 0.056±0.00 20.685±0.00 1.843±0.00 1.077±0.49 7.181±4.81 0.535±0.35
ENST00000564275 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A 0.071±0.00
ENST00000566441 N/A N/A N/A 0.125±0.00 N/A N/A 0.057±0.00 N/A N/A N/A N/A 0.440±0.00 N/A N/A
ENST00000566647 0.058±0.00 N/A N/A N/A N/A 0.353±0.00 N/A 0.087±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566870 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568085 N/A N/A N/A N/A 0.175±0.00 1.527±0.00 N/A N/A N/A 0.906±0.00 N/A N/A N/A N/A
ENST00000568923 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A 1.723±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D7 CIL_0006D7_0001 CGP 16:23182715-23381299
CIL_0006D6 CIL_0006D6_0001 CGP 16:23278231-23453180

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006814 TAS:IEA sodium ion transport
GO:0007588 TAS excretion
GO:0009897 IEA external side of plasma membrane
GO:0015280 IDA:IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034706 IDA sodium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0050699 IPI WW domain binding
GO:0050891 IDA multicellular organismal water homeostasis
GO:0050896 IEA response to stimulus
GO:0050909 IEA sensory perception of taste
GO:0055078 IDA sodium ion homeostasis
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030873 Scnn1b sodium channel, nonvoltage-gated 1 beta protein_coding Mus_musculus

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