C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: sodium channel, non-voltage-gated 1, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564275 SCNN1B-005 ENSG00000168447 9606 + 16:23348592-23380803 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartTestisENST00000564275
Transcript ID Heart Testis
ENST00000564275 0.123±0.00 0.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D7 CIL_0006D7_0001 CGP 16:23182715-23381299
CIL_0006D6 CIL_0006D6_0001 CGP 16:23278231-23453180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0006814 IEA sodium ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035725 IEA sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033161 Scnn1b-201 protein_coding Mus_musculus 0 1068

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