C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, non-voltage-gated 1, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343070 SCNN1B-001 ENSG00000168447 9606 + 16:23302270-23381299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343070
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343070 59.498±0.00 2.967±0.00 1.769±0.00 4.557±3.32 13.343±0.00 0.056±0.00 20.685±0.00 1.843±0.00 1.077±0.49 7.181±4.81 0.535±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006D7 CIL_0006D7_0001 CGP 16:23182715-23381299
CIL_0006D6 CIL_0006D6_0001 CGP 16:23278231-23453180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005272 IEA sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IDA integral component of plasma membrane
GO:0006814 TAS:IEA sodium ion transport
GO:0007588 TAS excretion
GO:0009897 IEA external side of plasma membrane
GO:0015280 IDA:IEA ligand-gated sodium channel activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0034706 IDA sodium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0050699 IPI WW domain binding
GO:0050891 IDA multicellular organismal water homeostasis
GO:0050896 IEA response to stimulus
GO:0050909 IEA sensory perception of taste
GO:0055078 IDA sodium ion homeostasis
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033161 Scnn1b-201 protein_coding Mus_musculus 0 1869

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