C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 48kDa (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168566 SNRNP48 9606 + 6:7590199-7611967 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342415 SNRNP48-001 7590199-7611967 protein_coding
  ENST00000496946 SNRNP48-002 7599673-7609206 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342415ENST00000496946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342415 2.172±0.00 1.825±0.00 0.351±0.00 0.800±0.36 1.881±0.22 2.165±0.90 1.842±0.03 2.002±1.02 1.342±0.12 1.023±0.56 4.058±0.00 2.959±1.85 1.798±1.27 2.301±0.57
ENST00000496946 N/A N/A 1.472±0.00 0.240±0.00 1.676±0.00 0.983±0.00 0.442±0.00 0.464±0.00 1.237±0.00 N/A N/A 1.186±0.00 N/A 0.669±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00037Z CIL_00037Z_0001 CGP 6:7541575-7611967
CIL_000380 CIL_000380_0001 CGP 6:7590199-7881422

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039989 snrnp48 small nuclear ribonucleoprotein 48 (U11/U12) protein_coding Danio_rerio
ENSMUSG00000021431 Snrnp48 small nuclear ribonucleoprotein 48 (U11/U12) protein_coding Mus_musculus

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