C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 48 (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021431 Snrnp48 10090 + 13:38204939-38227663 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000091641 Snrnp48-201 38204939-38227663 protein_coding
  ENSMUST00000178564 Snrnp48-202 38204951-38226922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000091641ENSMUST00000178564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000091641 1.976±0.00 13.025±1.28 3.626±0.00 3.373±0.00 N/A 3.540±0.39 1.608±0.00 2.385±0.70 3.612±1.46 N/A 2.318±0.55 4.712±1.66 4.124±1.62 2.173±0.61
ENSMUST00000178564 10.275±2.43 15.821±5.44 7.503±0.00 N/A 26.825±8.61 24.463±5.65 6.588±1.38 11.301±1.80 9.722±3.61 24.940±0.00 1.523±0.19 37.033±8.89 19.833±16.55 14.455±10.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T6 CIL_0007T6_0002 VISTA 13:37870525-38472280
CIL_00037Z CIL_00037Z_0002 CGP 13:38151328-38227663
CIL_000380 CIL_000380_0002 CGP 13:38204939-38499728

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005689 ISS U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039989 snrnp48 small nuclear ribonucleoprotein 48 (U11/U12) protein_coding Danio_rerio
ENSG00000168566 SNRNP48 small nuclear ribonucleoprotein 48kDa (U11/U12) protein_coding Homo_sapiens

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