C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168818 STX18 9606 - 4:4415742-4542346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306200 STX18-001 4418968-4542028 protein_coding
  ENST00000502267 STX18-008 4420095-4425649 retained_intron
  ENST00000503692 STX18-003 4418968-4426613 retained_intron
  ENST00000503861 STX18-006 4419943-4461937 nonsense_mediated_decay
  ENST00000505286 STX18-002 4415742-4542010 protein_coding
  ENST00000507908 STX18-004 4425173-4542346 protein_coding
  ENST00000510296 STX18-010 4420221-4423688 retained_intron
  ENST00000512195 STX18-007 4425161-4461954 protein_coding
  ENST00000512780 STX18-005 4438439-4542031 retained_intron
  ENST00000515687 STX18-009 4419334-4423823 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306200ENST00000503692ENST00000503861ENST00000507908ENST00000512195ENST00000512780ENST00000515687
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306200 7.338±0.00 6.122±0.00 0.974±0.00 9.750±4.75 4.707±2.51 2.181±0.45 2.638±2.12 12.427±0.00 1.907±0.01 4.040±0.00 3.298±0.00 8.353±5.56 9.893±1.47 20.372±1.44
ENST00000503692 N/A 1.538±0.00 0.770±0.00 N/A 0.668±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503861 N/A N/A N/A N/A 7.142±0.00 N/A N/A 14.346±0.00 N/A N/A 2.842±1.99 N/A N/A 17.799±0.00
ENST00000507908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.411±0.00 20.690±0.00 71.306±0.00
ENST00000512195 N/A N/A N/A N/A 3.326±0.00 N/A N/A 1.094±0.00 N/A 3.111±0.00 N/A N/A N/A N/A
ENST00000512780 N/A N/A N/A N/A N/A 4.572±0.00 1.391±0.00 1.847±0.00 N/A 3.891±0.00 0.556±0.00 4.866±0.00 N/A N/A
ENST00000515687 N/A 3.751±0.00 2.082±0.00 N/A N/A N/A N/A 1.155±0.00 2.391±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323
CIL_00096B CIL_00096B_0001 VISTA 4:4365944-4967466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035763 CABZ01086801.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000029125 Stx18 syntaxin 18 protein_coding Mus_musculus

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