C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: syntaxin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029125 Stx18 10090 + 5:38038742-38137765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031008 Stx18-005 38039233-38136817 protein_coding
  ENSMUST00000042146 Stx18-004 38039251-38136819 protein_coding
  ENSMUST00000114126 Stx18-001 38038742-38137765 protein_coding
  ENSMUST00000141286 Stx18-007 38134395-38136435 retained_intron
  ENSMUST00000146864 Stx18-002 38076557-38128073 processed_transcript
  ENSMUST00000147667 Stx18-006 38120909-38128099 retained_intron
  ENSMUST00000154929 Stx18-003 38039283-38136272 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031008ENSMUST00000042146ENSMUST00000114126ENSMUST00000146864ENSMUST00000154929
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031008 4.148±0.39 N/A 4.453±0.49 4.390±0.00 N/A 1.669±0.07 N/A 2.730±0.58 N/A 2.851±0.59 8.761±0.32 9.475±3.64 N/A
ENSMUST00000042146 15.106±2.58 12.786±1.27 7.622±1.02 11.791±2.11 9.923±2.12 5.724±0.92 8.288±3.50 7.590±2.40 11.741±0.51 2.822±0.86 13.860±4.42 7.370±2.19 12.872±5.05
ENSMUST00000114126 1.754±0.00 N/A N/A N/A 1.309±0.00 N/A 1.473±0.05 0.719±0.12 N/A N/A 2.309±0.19 N/A 2.840±0.00
ENSMUST00000146864 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.27 16.385±6.70 34.219±13.97 27.227±0.00
ENSMUST00000154929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.051±0.00 22.739±3.49 49.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000967 CIL_000967_0002 VISTA 5:37518652-38119645
CIL_0008Y0 CIL_0008Y0_0002 VISTA 5:37525669-38129220
CIL_0008DJ CIL_0008DJ_0002 VISTA 5:37551391-38152218
CIL_000969 CIL_000969_0002 VISTA 5:37601106-38202493
CIL_00096C CIL_00096C_0002 VISTA 5:37617742-38218594
CIL_00096B CIL_00096B_0002 VISTA 5:37667623-38269196
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019904 IPI protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035763 CABZ01086801.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000168818 STX18 syntaxin 18 protein_coding Homo_sapiens

Loading