C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306200 STX18-001 ENSG00000168818 9606 - 4:4418968-4542028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306200 7.338±0.00 6.122±0.00 0.974±0.00 9.750±4.75 4.707±2.51 2.181±0.45 2.638±2.12 12.427±0.00 1.907±0.01 4.040±0.00 3.298±0.00 8.353±5.56 9.893±1.47 20.372±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323
CIL_00096B CIL_00096B_0001 VISTA 4:4365944-4967466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0016021 IEA integral component of membrane
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114126 Stx18-001 protein_coding Mus_musculus 0 1253
ENSMUST00000031008 Stx18-005 protein_coding Mus_musculus 0 1116
ENSMUST00000154929 Stx18-003 protein_coding Mus_musculus 0 795
ENSMUST00000146864 Stx18-002 processed_transcript Mus_musculus 0 678
ENSMUST00000042146 Stx18-004 protein_coding Mus_musculus 0 647
ENSMUST00000141286 Stx18-007 retained_intron Mus_musculus 0 261

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