C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168883 USP39 9606 + 2:85602856-85649282 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323701 USP39-009 85616186-85649277 protein_coding
  ENST00000409025 USP39-003 85616143-85649253 protein_coding
  ENST00000409470 USP39-001 85616169-85649280 protein_coding
  ENST00000409766 USP39-010 85616194-85649277 protein_coding
  ENST00000442708 USP39-015 85612105-85625617 protein_coding
  ENST00000448971 USP39-014 85612103-85625589 protein_coding
  ENST00000450066 USP39-201 85612103-85649282 protein_coding
  ENST00000455732 USP39-018 85616152-85623778 processed_transcript
  ENST00000458268 USP39-019 85616187-85625690 nonsense_mediated_decay
  ENST00000459775 USP39-012 85602856-85649280 processed_transcript
  ENST00000465282 USP39-013 85612122-85623790 processed_transcript
  ENST00000465514 USP39-022 85644948-85649111 processed_transcript
  ENST00000467885 USP39-007 85625539-85639241 nonsense_mediated_decay
  ENST00000474572 USP39-016 85611378-85621504 processed_transcript
  ENST00000481409 USP39-020 85639293-85639822 processed_transcript
  ENST00000490193 USP39-023 85636086-85649207 processed_transcript
  ENST00000491659 USP39-021 85602856-85623782 processed_transcript
  ENST00000493829 USP39-006 85616290-85645274 retained_intron
  ENST00000496047 USP39-024 85641055-85646167 processed_transcript
  ENST00000613444 USP39-202 85612103-85649282 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323701ENST00000409025ENST00000409470ENST00000409766ENST00000459775ENST00000465514ENST00000490193ENST00000613444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323701 16.325±0.00 15.264±0.00 N/A 5.005±2.97 14.332±0.00 15.778±0.00 9.845±0.00 13.531±0.00 7.148±0.00 21.808±0.00 13.749±5.85 17.908±9.05 24.543±8.48 16.050±2.28
ENST00000409025 N/A N/A 1.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409470 N/A N/A 1.732±0.00 2.793±0.00 3.120±0.00 2.554±0.00 2.681±0.00 2.931±0.00 3.860±0.00 4.838±0.00 N/A 6.644±2.41 7.412±0.00 N/A
ENST00000409766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.788±0.00 12.171±0.00 N/A
ENST00000459775 N/A N/A N/A 3.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465514 N/A 32.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490193 N/A N/A N/A N/A N/A 4.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613444 N/A N/A N/A 1.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0003NX CIL_0003NX_0001 CGP 2:85602856-85649282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0005681 IEA spliceosomal complex
GO:0006397 TAS mRNA processing
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041908 usp39 ubiquitin specific peptidase 39 protein_coding Danio_rerio
ENSMUSG00000056305 Usp39 ubiquitin specific peptidase 39 protein_coding Mus_musculus

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