C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168883-ENSG00000168883 CGP 9606 2:85602856-85649282
GeneTranscriptPositionBiotype
ENSG00000168883 (USP39)
ubiquitin specific peptidase 39 		ENST00000323701 (USP39-009) 85616186-85649277 protein_coding
ENST00000409025 (USP39-003) 85616143-85649253 protein_coding
ENST00000409470 (USP39-001) 85616169-85649280 protein_coding
ENST00000409766 (USP39-010) 85616194-85649277 protein_coding
ENST00000442708 (USP39-015) 85612105-85625617 protein_coding
ENST00000448971 (USP39-014) 85612103-85625589 protein_coding
ENST00000450066 (USP39-201) 85612103-85649282 protein_coding
ENST00000455732 (USP39-018) 85616152-85623778 processed_transcript
ENST00000458268 (USP39-019) 85616187-85625690 nonsense_mediated_decay
ENST00000459775 (USP39-012) 85602856-85649280 processed_transcript
ENST00000465282 (USP39-013) 85612122-85623790 processed_transcript
ENST00000465514 (USP39-022) 85644948-85649111 processed_transcript
ENST00000467885 (USP39-007) 85625539-85639241 nonsense_mediated_decay
ENST00000474572 (USP39-016) 85611378-85621504 processed_transcript
ENST00000481409 (USP39-020) 85639293-85639822 processed_transcript
ENST00000490193 (USP39-023) 85636086-85649207 processed_transcript
ENST00000491659 (USP39-021) 85602856-85623782 processed_transcript
ENST00000493829 (USP39-006) 85616290-85645274 retained_intron
ENST00000496047 (USP39-024) 85641055-85646167 processed_transcript
ENST00000613444 (USP39-202) 85612103-85649282 protein_coding
ENSG00000168887 (C2orf68)
chromosome 2 open reading frame 68 		ENST00000306336 (C2orf68-001) 85606654-85612029 protein_coding
ENST00000409734 (C2orf68-002) 85610220-85612032 protein_coding
ENST00000420686 (C2orf68-004) 85608284-85611935 nonsense_mediated_decay
ENST00000423181 (C2orf68-003) 85608567-85612066 nonsense_mediated_decay
ENST00000478626 (C2orf68-005) 85611243-85611741 processed_transcript
ENSG00000168890 (TMEM150A)
transmembrane protein 150A 		ENST00000306353 (TMEM150A-002) 85598548-85602698 protein_coding
ENST00000334462 (TMEM150A-001) 85598562-85602678 protein_coding
ENST00000409668 (TMEM150A-005) 85598584-85602416 protein_coding
ENST00000417791 (TMEM150A-007) 85599618-85602665 retained_intron
ENST00000422458 (TMEM150A-011) 85599085-85601482 nonsense_mediated_decay
ENST00000425160 (TMEM150A-010) 85599927-85601758 protein_coding
ENST00000431593 (TMEM150A-003) 85598549-85602669 retained_intron
ENST00000433956 (TMEM150A-008) 85600345-85602654 nonsense_mediated_decay
ENST00000444380 (TMEM150A-004) 85598578-85602659 retained_intron
ENST00000451147 (TMEM150A-009) 85599592-85601765 nonsense_mediated_decay
ENST00000455852 (TMEM150A-006) 85601261-85603196 retained_intron
ENST00000463363 (TMEM150A-012) 85598653-85599990 retained_intron
CIL_0003NX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056305-ENSMUSG00000058706 CGP 10090 6:72318678-72353158
GeneTranscriptPositionBiotype
ENSMUSG00000056305 (Usp39)
ubiquitin specific peptidase 39 		ENSMUST00000070345 (Usp39-001) 72318678-72345184 protein_coding
ENSMUST00000154799 (Usp39-002) 72321300-72333368 processed_transcript
ENSMUSG00000058706 (0610030E20Rik)
RIKEN cDNA 0610030E20 gene 		ENSMUST00000077783 (0610030E20Rik-201) 72347317-72353158 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NX_0001ENSG00000168883ENST00000323701ENST00000409025ENST00000409470ENST00000409766ENST00000459775ENST00000465514ENST00000490193ENST00000613444ENSG00000168887ENST00000306336ENST00000409734ENST00000420686ENSG00000168890ENST00000306353ENST00000334462CIL_0003NX_0002ENSMUSG00000056305ENSMUST00000070345ENSMUSG00000058706ENSMUST00000077783
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000168883 ENST00000323701 16.325±0.00 15.264±0.00 N/A 5.005±2.97 14.332±0.00 15.778±0.00 9.845±0.00 13.531±0.00 7.148±0.00 21.808±0.00 13.749±5.85 17.908±9.05 24.543±8.48 16.050±2.28
ENST00000409025 N/A N/A 1.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409470 N/A N/A 1.732±0.00 2.793±0.00 3.120±0.00 2.554±0.00 2.681±0.00 2.931±0.00 3.860±0.00 4.838±0.00 N/A 6.644±2.41 7.412±0.00 N/A
ENST00000409766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.788±0.00 12.171±0.00 N/A
ENST00000442708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459775 N/A N/A N/A 3.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465514 N/A 32.557±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490193 N/A N/A N/A N/A N/A 4.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613444 N/A N/A N/A 1.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168887 ENST00000306336 N/A N/A N/A 3.029±0.00 N/A 3.483±0.88 N/A 2.831±0.00 2.858±0.23 5.208±2.08 6.066±0.00 N/A N/A N/A
ENST00000409734 N/A N/A 3.831±0.00 N/A N/A 3.042±0.00 2.299±0.00 2.666±0.00 N/A 2.458±0.00 N/A 3.356±0.00 N/A N/A
ENST00000420686 N/A N/A N/A N/A N/A N/A 11.448±0.00 14.484±0.00 7.107±0.00 N/A 25.455±0.00 N/A N/A 25.870±5.25
ENST00000423181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168890 ENST00000306353 N/A N/A N/A N/A N/A N/A N/A 16.548±0.00 N/A N/A N/A N/A N/A N/A
ENST00000334462 N/A N/A N/A N/A N/A 12.048±0.00 N/A N/A 11.136±0.00 N/A 19.593±0.00 N/A 39.411±16.36 N/A
ENST00000409668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000056305 ENSMUST00000070345 9.051±1.63 7.706±2.48 8.998±0.06 10.879±6.10 10.886±3.43 6.372±0.70 5.788±0.26 7.485±1.80 15.066±11.13 10.736±1.79 7.207±1.66 12.565±3.04 24.523±3.37 10.818±5.15
ENSMUST00000154799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058706 ENSMUST00000077783 3.567±0.23 7.467±1.02 11.169±2.22 2.382±2.07 4.615±2.41 6.426±0.84 1.597±0.49 5.356±1.04 7.721±2.36 3.462±0.00 0.722±0.21 7.496±3.72 4.234±1.96 4.612±2.12

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