C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323701 USP39-009 ENSG00000168883 9606 + 2:85616186-85649277 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323701
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323701 16.325±0.00 15.264±0.00 5.005±2.97 14.332±0.00 15.778±0.00 9.845±0.00 13.531±0.00 7.148±0.00 21.808±0.00 13.749±5.85 17.908±9.05 24.543±8.48 16.050±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0003NX CIL_0003NX_0001 CGP 2:85602856-85649282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0005681 IEA spliceosomal complex
GO:0006397 TAS mRNA processing
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070345 Usp39-001 protein_coding Mus_musculus 0 2246
ENSMUST00000154799 Usp39-002 processed_transcript Mus_musculus 0 743

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