C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409470 USP39-001 ENSG00000168883 9606 + 2:85616169-85649280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000409470
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000409470 1.732±0.00 2.793±0.00 3.120±0.00 2.554±0.00 2.681±0.00 2.931±0.00 3.860±0.00 4.838±0.00 6.644±2.41 7.412±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0003NX CIL_0003NX_0001 CGP 2:85602856-85649282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 TAS spliceosomal complex assembly
GO:0005681 IEA spliceosomal complex
GO:0006397 TAS mRNA processing
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070345 Usp39-001 protein_coding Mus_musculus 0 2193
ENSMUST00000154799 Usp39-002 processed_transcript Mus_musculus 0 743

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