C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stimulated by retinoic acid 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169689 STRA13 9606 - 17:82018702-82024107 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306704 STRA13-001 82018703-82022918 protein_coding
  ENST00000392359 STRA13-002 82018703-82022918 protein_coding
  ENST00000577379 STRA13-010 82018838-82022849 processed_transcript
  ENST00000579520 STRA13-004 82018702-82024107 protein_coding
  ENST00000580090 STRA13-007 82018844-82022873 processed_transcript
  ENST00000580435 STRA13-003 82018703-82022892 protein_coding
  ENST00000583767 STRA13-009 82018866-82022852 processed_transcript
  ENST00000584347 STRA13-006 82018801-82022879 protein_coding
  ENST00000584514 STRA13-011 82018716-82022821 processed_transcript
  ENST00000584600 STRA13-008 82018703-82022858 protein_coding
  ENST00000585091 STRA13-005 82019157-82022884 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306704ENST00000392359ENST00000579520ENST00000580090ENST00000580435ENST00000584514ENST00000584600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306704 5.845±0.00 17.294±0.00 N/A 7.123±4.93 9.470±0.00 14.665±0.00 6.457±0.00 21.760±0.00 9.616±0.00 12.883±0.00 6.834±0.00 14.396±1.70 19.847±0.74 16.775±0.00
ENST00000392359 11.225±0.00 7.088±0.00 N/A 5.268±0.00 13.331±0.00 N/A N/A 2.303±0.00 3.852±3.06 8.843±8.09 N/A 9.608±6.65 15.595±0.88 7.087±0.10
ENST00000579520 N/A N/A 0.444±0.00 N/A N/A N/A 0.303±0.00 N/A 0.312±0.00 N/A N/A N/A N/A N/A
ENST00000580090 N/A N/A N/A N/A N/A N/A N/A 2.329±0.00 N/A N/A N/A 0.525±0.00 N/A 7.158±0.00
ENST00000580435 N/A N/A 0.242±0.00 N/A N/A 6.457±0.00 N/A N/A N/A 0.626±0.00 0.205±0.00 1.222±0.00 12.809±0.00 N/A
ENST00000584514 N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584600 N/A 5.773±0.00 N/A N/A N/A 5.134±3.75 2.010±1.73 10.537±0.00 7.887±0.00 N/A N/A N/A N/A 6.757±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VS CIL_0004VS_0001 CGP 17:81976807-82024107
CIL_0004VR CIL_0004VR_0001 CGP 17:82018702-82031151

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000712 IMP resolution of meiotic recombination intermediates
GO:0000776 IEA kinetochore
GO:0003677 IDA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0006281 IEA DNA repair
GO:0007067 IEA mitotic nuclear division
GO:0031297 IMP replication fork processing
GO:0031398 TAS positive regulation of protein ubiquitination
GO:0043240 IDA Fanconi anaemia nuclear complex
GO:0046982 IEA protein heterodimerization activity
GO:0051382 IEA kinetochore assembly
GO:0071821 IDA FANCM-MHF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089291 stra13 stimulated by retinoic acid 13 homolog (mouse) protein_coding Danio_rerio
ENSMUSG00000025144 Stra13 stimulated by retinoic acid 13 protein_coding Mus_musculus

Loading