C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stimulated by retinoic acid 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025144 Stra13 10090 - 11:120710942-120713738 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026137 Stra13-003 120710943-120713738 protein_coding
  ENSMUST00000055424 Stra13-001 120710942-120713738 protein_coding
  ENSMUST00000106154 Stra13-002 120710942-120713732 protein_coding
  ENSMUST00000106155 Stra13-004 120710942-120713732 protein_coding
  ENSMUST00000128543 Stra13-005 120710942-120711983 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026137ENSMUST00000055424ENSMUST00000106154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026137 N/A N/A N/A 4.657±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000055424 31.004±3.43 35.006±8.25 25.902±11.84 10.786±7.42 33.669±12.46 34.817±3.47 8.889±1.65 57.605±1.83 45.916±22.03 29.127±3.28 5.774±0.89 26.251±7.09 21.519±11.65 15.969±7.74
ENSMUST00000106154 11.061±3.25 5.474±0.00 N/A 5.266±3.53 7.619±0.31 3.965±0.00 3.354±0.59 6.619±0.86 3.027±0.42 4.603±0.38 8.001±0.85 4.118±2.34 3.578±2.19 8.397±4.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VS CIL_0004VS_0002 CGP 11:120672973-120713738
CIL_0004VR CIL_0004VR_0002 CGP 11:120710942-120721128

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000712 ISS resolution of meiotic recombination intermediates
GO:0000776 IEA kinetochore
GO:0003677 ISS DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0005515 IEA protein binding
GO:0006281 IEA DNA repair
GO:0007067 IEA mitotic nuclear division
GO:0031297 ISS replication fork processing
GO:0043240 ISS Fanconi anaemia nuclear complex
GO:0051382 IEA kinetochore assembly
GO:0071821 ISS FANCM-MHF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089291 stra13 stimulated by retinoic acid 13 homolog (mouse) protein_coding Danio_rerio
ENSG00000169689 STRA13 stimulated by retinoic acid 13 protein_coding Homo_sapiens

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