C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004VR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169689-ENSG00000169683 CGP 9606 17:82018702-82031151
GeneTranscriptPositionBiotype
ENSG00000169683 (LRRC45)
leucine rich repeat containing 45 		ENST00000306688 (LRRC45-001) 82023302-82031151 protein_coding
ENST00000577638 (LRRC45-003) 82023922-82025440 protein_coding
ENST00000581227 (LRRC45-005) 82027007-82030632 nonsense_mediated_decay
ENST00000582083 (LRRC45-006) 82028741-82030146 retained_intron
ENST00000583302 (LRRC45-004) 82026806-82029232 retained_intron
ENST00000583383 (LRRC45-002) 82023321-82025425 processed_transcript
ENSG00000169689 (STRA13)
stimulated by retinoic acid 13 		ENST00000306704 (STRA13-001) 82018703-82022918 protein_coding
ENST00000392359 (STRA13-002) 82018703-82022918 protein_coding
ENST00000577379 (STRA13-010) 82018838-82022849 processed_transcript
ENST00000579520 (STRA13-004) 82018702-82024107 protein_coding
ENST00000580090 (STRA13-007) 82018844-82022873 processed_transcript
ENST00000580435 (STRA13-003) 82018703-82022892 protein_coding
ENST00000583767 (STRA13-009) 82018866-82022852 processed_transcript
ENST00000584347 (STRA13-006) 82018801-82022879 protein_coding
ENST00000584514 (STRA13-011) 82018716-82022821 processed_transcript
ENST00000584600 (STRA13-008) 82018703-82022858 protein_coding
ENST00000585091 (STRA13-005) 82019157-82022884 retained_intron
ENSG00000275682 (AC137723.1)
 ENST00000612169 (AC137723.1-201) 82024633-82024692 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004VR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025144-ENSMUSG00000025145 CGP 10090 11:120710942-120721128
GeneTranscriptPositionBiotype
ENSMUSG00000025144 (Stra13)
stimulated by retinoic acid 13 		ENSMUST00000026137 (Stra13-003) 120710943-120713738 protein_coding
ENSMUST00000055424 (Stra13-001) 120710942-120713738 protein_coding
ENSMUST00000106154 (Stra13-002) 120710942-120713732 protein_coding
ENSMUST00000106155 (Stra13-004) 120710942-120713732 protein_coding
ENSMUST00000128543 (Stra13-005) 120710942-120711983 processed_transcript
ENSMUSG00000025145 (Lrrc45)
leucine rich repeat containing 45 		ENSMUST00000026139 (Lrrc45-001) 120713925-120721128 protein_coding
ENSMUST00000145781 (Lrrc45-002) 120713951-120721123 nonsense_mediated_decay
ENSMUST00000150225 (Lrrc45-004) 120717515-120719972 retained_intron
ENSMUST00000151852 (Lrrc45-003) 120713978-120715554 protein_coding
ENSMUST00000155187 (Lrrc45-005) 120719731-120720912 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VR_0001ENSG00000169683ENST00000306688ENST00000577638ENST00000581227ENST00000582083ENST00000583302ENST00000583383ENSG00000169689ENST00000306704ENST00000392359ENST00000577379ENST00000579520ENST00000580090ENST00000580435ENST00000583767ENST00000584347ENST00000584514ENST00000584600ENST00000585091ENSG00000275682ENST00000612169CIL_0004VR_0002ENSMUSG00000025144ENSMUST00000026137ENSMUST00000055424ENSMUST00000106154ENSMUST00000106155ENSMUST00000128543ENSMUSG00000025145ENSMUST00000026139ENSMUST00000145781ENSMUST00000150225ENSMUST00000151852ENSMUST00000155187
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VR_0001ENSG00000169683ENST00000306688ENST00000577638ENST00000581227ENST00000582083ENST00000583302ENSG00000169689ENST00000306704ENST00000392359ENST00000579520ENST00000580090ENST00000580435ENST00000584514ENST00000584600ENSG00000275682ENST00000612169CIL_0004VR_0002ENSMUSG00000025144ENSMUST00000026137ENSMUST00000055424ENSMUST00000106154ENSMUSG00000025145ENSMUST00000026139ENSMUST00000145781ENSMUST00000150225ENSMUST00000155187
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169683 ENST00000306688 2.121±0.00 3.868±0.00 0.106±0.00 1.475±0.58 4.458±0.00 2.270±1.52 0.968±0.82 2.955±2.08 2.352±2.01 4.259±0.00 1.276±0.00 4.674±2.71 6.377±1.14 3.389±0.66
ENST00000577638 N/A N/A 0.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581227 N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A 0.061±0.00 N/A N/A N/A
ENST00000582083 N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583302 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A
ENST00000583383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169689 ENST00000306704 5.845±0.00 17.294±0.00 N/A 7.123±4.93 9.470±0.00 14.665±0.00 6.457±0.00 21.760±0.00 9.616±0.00 12.883±0.00 6.834±0.00 14.396±1.70 19.847±0.74 16.775±0.00
ENST00000392359 11.225±0.00 7.088±0.00 N/A 5.268±0.00 13.331±0.00 N/A N/A 2.303±0.00 3.852±3.06 8.843±8.09 N/A 9.608±6.65 15.595±0.88 7.087±0.10
ENST00000577379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579520 N/A N/A 0.444±0.00 N/A N/A N/A 0.303±0.00 N/A 0.312±0.00 N/A N/A N/A N/A N/A
ENST00000580090 N/A N/A N/A N/A N/A N/A N/A 2.329±0.00 N/A N/A N/A 0.525±0.00 N/A 7.158±0.00
ENST00000580435 N/A N/A 0.242±0.00 N/A N/A 6.457±0.00 N/A N/A N/A 0.626±0.00 0.205±0.00 1.222±0.00 12.809±0.00 N/A
ENST00000583767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584514 N/A N/A N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584600 N/A 5.773±0.00 N/A N/A N/A 5.134±3.75 2.010±1.73 10.537±0.00 7.887±0.00 N/A N/A N/A N/A 6.757±0.00
ENST00000585091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275682 ENST00000612169 1.537±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025144 ENSMUST00000026137 N/A N/A N/A 4.657±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000055424 31.004±3.43 35.006±8.25 25.902±11.84 10.786±7.42 33.669±12.46 34.817±3.47 8.889±1.65 57.605±1.83 45.916±22.03 29.127±3.28 5.774±0.89 26.251±7.09 21.519±11.65 15.969±7.74
ENSMUST00000106154 11.061±3.25 5.474±0.00 N/A 5.266±3.53 7.619±0.31 3.965±0.00 3.354±0.59 6.619±0.86 3.027±0.42 4.603±0.38 8.001±0.85 4.118±2.34 3.578±2.19 8.397±4.04
ENSMUST00000106155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025145 ENSMUST00000026139 5.400±2.23 2.215±0.00 9.147±1.74 13.318±6.68 3.960±0.83 5.350±2.11 1.015±0.46 2.775±0.79 2.942±1.57 9.596±0.00 1.391±0.52 20.400±23.69 5.995±4.17 2.858±2.22
ENSMUST00000145781 4.328±1.73 4.682±0.00 6.750±1.62 27.824±7.28 4.177±1.07 3.721±0.82 0.642±0.15 2.538±1.18 1.361±0.38 N/A 1.023±0.29 11.378±1.15 0.972±0.13 1.397±0.40
ENSMUST00000150225 9.834±4.74 10.764±3.96 13.211±0.07 21.185±5.37 7.553±0.89 9.588±1.80 2.007±0.64 3.647±0.60 2.841±0.85 N/A 1.292±0.30 21.633±4.70 2.789±0.78 2.227±0.39
ENSMUST00000151852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155187 N/A N/A N/A N/A N/A N/A N/A 3.549±0.54 1.205±0.00 N/A N/A N/A N/A N/A

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