C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169733 RFNG 9606 - 17:82047902-82051831 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310496 RFNG-001 82047902-82051774 protein_coding
  ENST00000429557 RFNG-009 82048553-82051434 protein_coding
  ENST00000578356 RFNG-008 82050415-82051573 protein_coding
  ENST00000578676 RFNG-011 82048445-82051335 retained_intron
  ENST00000580793 RFNG-006 82047902-82050514 retained_intron
  ENST00000580928 RFNG-013 82049793-82050759 processed_transcript
  ENST00000580953 RFNG-004 82047906-82051562 retained_intron
  ENST00000582478 RFNG-002 82047902-82051831 retained_intron
  ENST00000583784 RFNG-005 82047902-82050787 retained_intron
  ENST00000584463 RFNG-010 82050455-82051407 retained_intron
  ENST00000584515 RFNG-007 82049907-82051586 retained_intron
  ENST00000584838 RFNG-012 82048749-82050990 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310496ENST00000580793
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310496 19.217±0.00 16.010±0.00 9.541±0.00 25.491±0.00 20.024±0.00 6.944±0.00 22.565±0.00 14.145±12.60 13.846±0.00 23.606±0.00 21.029±14.69 16.182±0.03 27.383±0.00
ENST00000580793 N/A N/A N/A N/A N/A N/A N/A N/A 1.944±0.00 N/A 23.007±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043X CIL_00043X_0002 CGP 17:82035136-82051831
CIL_0004VP CIL_0004VP_0001 CGP 17:82047902-82057470

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 NAS extracellular region
GO:0007389 IEA pattern specification process
GO:0007399 IEA nervous system development
GO:0008152 IEA metabolic process
GO:0009887 NAS organ morphogenesis
GO:0016020 IEA membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030154 IEA cell differentiation
GO:0030173 IEA integral component of Golgi membrane
GO:0032092 IEA positive regulation of protein binding
GO:0033829 IEA O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019746 rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein_coding Danio_rerio
ENSMUSG00000025158 Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein_coding Mus_musculus

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