C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310496 RFNG-001 ENSG00000169733 9606 - 17:82047902-82051774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310496
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310496 19.217±0.00 16.010±0.00 9.541±0.00 25.491±0.00 20.024±0.00 6.944±0.00 22.565±0.00 14.145±12.60 13.846±0.00 23.606±0.00 21.029±14.69 16.182±0.03 27.383±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043X CIL_00043X_0002 CGP 17:82035136-82051831
CIL_0004VP CIL_0004VP_0001 CGP 17:82047902-82057470

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 NAS extracellular region
GO:0007389 IEA pattern specification process
GO:0007399 IEA nervous system development
GO:0008152 IEA metabolic process
GO:0009887 NAS organ morphogenesis
GO:0016020 IEA membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030154 IEA cell differentiation
GO:0030173 IEA integral component of Golgi membrane
GO:0032092 IEA positive regulation of protein binding
GO:0033829 IEA O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity
GO:0045747 IEA positive regulation of Notch signaling pathway
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031555 Lfng-201 protein_coding Mus_musculus 0 228
ENSMUST00000123273 Rfng-002 processed_transcript Mus_musculus 0 457
ENSMUST00000026156 Rfng-001 protein_coding Mus_musculus 0 832

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