C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004VP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169733-ENSG00000169727 CGP 9606 17:82047902-82057470
GeneTranscriptPositionBiotype
ENSG00000169727 (GPS1)
G protein pathway suppressor 1
ENST00000306823 (GPS1-004) 82051909-82057470 protein_coding
ENST00000320548 (GPS1-003) 82051875-82057470 protein_coding
ENST00000392357 (GPS1-007) 82052570-82057470 retained_intron
ENST00000392358 (GPS1-006) 82051958-82057470 protein_coding
ENST00000578168 (GPS1-024) 82056524-82057470 protein_coding
ENST00000578279 (GPS1-023) 82054952-82057117 retained_intron
ENST00000578392 (GPS1-019) 82051908-82054542 nonsense_mediated_decay
ENST00000578552 (GPS1-001) 82051865-82057470 protein_coding
ENST00000578642 (GPS1-015) 82051898-82053785 retained_intron
ENST00000580141 (GPS1-016) 82051901-82056019 nonsense_mediated_decay
ENST00000580627 (GPS1-018) 82051902-82054682 nonsense_mediated_decay
ENST00000580716 (GPS1-010) 82051477-82054741 protein_coding
ENST00000580723 (GPS1-021) 82051927-82054738 nonsense_mediated_decay
ENST00000581418 (GPS1-017) 82051901-82054668 protein_coding
ENST00000581578 (GPS1-013) 82051897-82054542 protein_coding
ENST00000582327 (GPS1-008) 82050948-82054651 protein_coding
ENST00000583009 (GPS1-022) 82052233-82054569 protein_coding
ENST00000583486 (GPS1-025) 82056524-82057470 retained_intron
ENST00000583641 (GPS1-012) 82051897-82054757 protein_coding
ENST00000583885 (GPS1-014) 82051897-82054559 protein_coding
ENST00000583961 (GPS1-011) 82051500-82054586 protein_coding
ENST00000583983 (GPS1-026) 82050691-82051837 processed_transcript
ENST00000584229 (GPS1-020) 82051925-82053225 processed_transcript
ENST00000584460 (GPS1-005) 82051929-82057463 nonsense_mediated_decay
ENST00000585084 (GPS1-009) 82051175-82054968 protein_coding
ENST00000623691 (GPS1-028) 82051897-82057470 protein_coding
ENST00000623761 (GPS1-029) 82052242-82057424 protein_coding
ENST00000624957 (GPS1-027) 82051893-82057440 protein_coding
ENSG00000169733 (RFNG)
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
ENST00000310496 (RFNG-001) 82047902-82051774 protein_coding
ENST00000429557 (RFNG-009) 82048553-82051434 protein_coding
ENST00000578356 (RFNG-008) 82050415-82051573 protein_coding
ENST00000578676 (RFNG-011) 82048445-82051335 retained_intron
ENST00000580793 (RFNG-006) 82047902-82050514 retained_intron
ENST00000580928 (RFNG-013) 82049793-82050759 processed_transcript
ENST00000580953 (RFNG-004) 82047906-82051562 retained_intron
ENST00000582478 (RFNG-002) 82047902-82051831 retained_intron
ENST00000583784 (RFNG-005) 82047902-82050787 retained_intron
ENST00000584463 (RFNG-010) 82050455-82051407 retained_intron
ENST00000584515 (RFNG-007) 82049907-82051586 retained_intron
ENST00000584838 (RFNG-012) 82048749-82050990 processed_transcript

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004VP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025158-ENSMUSG00000025156 CGP 10090 11:120780746-120789102
GeneTranscriptPositionBiotype
ENSMUSG00000025156 (Gps1)
G protein pathway suppressor 1
ENSMUST00000100134 (Gps1-001) 120784275-120789097 protein_coding
ENSMUST00000116305 (Gps1-007) 120784305-120789102 protein_coding
ENSMUST00000132422 (Gps1-003) 120784272-120786333 retained_intron
ENSMUST00000144519 (Gps1-004) 120786772-120787761 retained_intron
ENSMUST00000153678 (Gps1-006) 120784275-120788783 nonsense_mediated_decay
ENSMUST00000156723 (Gps1-005) 120787769-120788596 retained_intron
ENSMUST00000172809 (Gps1-002) 120784515-120789102 protein_coding
ENSMUSG00000025158 (Rfng)
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
ENSMUST00000026156 (Rfng-001) 120780748-120784207 protein_coding
ENSMUST00000123273 (Rfng-002) 120780746-120784185 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004VP_0001ENSG00000169727ENST00000306823ENST00000320548ENST00000392358ENST00000578279ENST00000578552ENST00000580141ENST00000580716ENST00000581418ENST00000583486ENST00000583641ENST00000584460ENST00000585084ENST00000623691ENST00000623761ENSG00000169733ENST00000310496ENST00000580793CIL_0004VP_0002ENSMUSG00000025156ENSMUST00000100134ENSMUST00000116305ENSMUST00000153678ENSMUST00000156723ENSMUST00000172809ENSMUSG00000025158ENSMUST00000026156ENSMUST00000123273
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000169727 ENST00000306823 13.138±0.00 23.713±0.00 1.586±0.00 7.130±4.30 3.423±0.00 8.244±0.00 5.780±0.00 6.590±0.00 N/A 8.648±0.00 27.069±0.00 18.831±0.00 10.424±1.58 N/A
ENST00000320548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.310±4.58
ENST00000392357 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.761±0.00 N/A N/A N/A
ENST00000578168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.658±0.00 N/A N/A
ENST00000578392 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578552 18.862±0.00 14.746±0.00 N/A 6.532±3.79 28.137±0.00 10.948±0.00 7.904±6.03 36.639±0.00 13.580±10.37 14.180±0.00 32.663±25.12 21.264±8.79 23.552±9.51 35.839±0.00
ENST00000578642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580141 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.549±0.00 N/A 16.840±0.00 21.962±0.00 32.681±0.00
ENST00000580627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.562±0.00 22.224±0.00 N/A
ENST00000580723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000581418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.268±0.00 N/A N/A N/A
ENST00000581578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583486 N/A N/A N/A N/A 3.232±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.759±0.00
ENST00000583885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584460 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.780±0.00 N/A N/A N/A N/A
ENST00000585084 N/A N/A N/A N/A N/A N/A N/A N/A 3.687±0.00 N/A N/A N/A N/A N/A
ENST00000623691 N/A N/A 1.262±0.00 3.504±0.00 11.017±0.00 6.065±2.06 3.240±1.48 N/A N/A 9.995±0.00 34.255±0.00 9.708±5.49 15.097±4.91 21.452±0.00
ENST00000623761 N/A N/A N/A 7.377±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.910±0.00
ENST00000624957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000169733 ENST00000310496 19.217±0.00 16.010±0.00 N/A 9.541±0.00 25.491±0.00 20.024±0.00 6.944±0.00 22.565±0.00 14.145±12.60 13.846±0.00 23.606±0.00 21.029±14.69 16.182±0.03 27.383±0.00
ENST00000429557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580793 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.944±0.00 N/A 23.007±0.00 N/A N/A
ENST00000580928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025156 ENSMUST00000100134 15.142±4.09 14.204±1.13 18.578±2.10 26.212±14.00 14.840±1.33 12.767±1.76 6.557±1.15 10.912±2.31 9.616±5.14 15.092±1.92 5.504±1.18 25.978±7.90 10.187±3.39 12.097±0.51
ENSMUST00000116305 22.595±2.41 20.505±7.54 36.047±3.50 53.480±33.21 41.971±7.91 10.378±3.27 25.733±0.42 43.799±4.48 24.800±8.13 24.540±6.96 21.651±2.35 29.714±8.80 28.567±13.89 N/A
ENSMUST00000132422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153678 N/A N/A N/A 15.846±0.00 N/A N/A N/A N/A N/A N/A N/A 20.678±0.00 20.479±5.71 23.519±0.00
ENSMUST00000156723 N/A N/A N/A N/A 37.805±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172809 30.952±9.66 65.389±13.80 8.394±1.53 8.176±0.00 31.969±11.80 37.955±1.79 N/A 12.561±3.95 14.815±4.67 16.631±5.67 N/A 90.448±19.29 15.133±0.51 71.392±33.37
ENSMUSG00000025158 ENSMUST00000026156 17.013±0.58 29.973±15.44 10.907±4.92 27.612±7.60 17.657±6.37 22.281±4.55 6.763±0.94 21.956±2.58 7.133±3.14 17.417±2.92 6.204±0.73 20.855±8.90 3.444±1.30 3.287±1.29
ENSMUST00000123273 4.296±1.19 N/A 5.270±0.84 16.787±10.49 2.163±1.07 N/A 1.536±0.20 3.591±0.34 2.409±0.70 3.358±0.16 1.270±0.34 4.167±0.81 1.768±1.18 0.608±0.08

Loading