Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info
Description:	bromodomain containing 3
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000169925	BRD3	9606	-	9:134030305-134068535	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000303407		BRD3-001	134030305-134068017	protein_coding
	ENST00000371834		BRD3-002	134036028-134068535	protein_coding
	ENST00000371842		BRD3-004	134052433-134056012	protein_coding
	ENST00000433041		BRD3-005	134053418-134054140	protein_coding
	ENST00000473349		BRD3-003	134033402-134041794	processed_transcript
	ENST00000494743		BRD3-006	134048002-134050427	retained_intron

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000303407	9.639±0.00	5.925±0.00	1.389±0.00	4.718±3.34	4.488±3.10	6.137±4.10	2.960±2.73	3.986±2.83	2.017±0.33	2.585±2.08	11.891±0.00	8.625±5.28	6.258±1.75	11.380±2.59
ENST00000473349	N/A	N/A	4.635±0.00	N/A	3.866±0.00	3.906±0.00	0.721±0.00	3.843±0.00	N/A	N/A	N/A	N/A	N/A	N/A

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_00014Z	CIL_00014Z_0001	CGP	9:133761894-134068535
CIL_000150	CIL_000150_0001	CGP	9:134030305-134159968

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003682	IDA	chromatin binding
GO:0005515	IPI:IEA	protein binding
GO:0005634	IEA	nucleus
GO:0006351	IEA	transcription, DNA-templated
GO:0006357	IDA	regulation of transcription from RNA polymerase II promoter
GO:0016568	IEA	chromatin modification
GO:0070577	IDA	lysine-acetylated histone binding

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000006527	brd3a	bromodomain containing 3a	protein_coding	Danio_rerio
ENSMUSG00000026918	Brd3	bromodomain containing 3	protein_coding	Mus_musculus

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