C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303407 BRD3-001 ENSG00000169925 9606 - 9:134030305-134068017 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303407 9.639±0.00 5.925±0.00 1.389±0.00 4.718±3.34 4.488±3.10 6.137±4.10 2.960±2.73 3.986±2.83 2.017±0.33 2.585±2.08 11.891±0.00 8.625±5.28 6.258±1.75 11.380±2.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014Z CIL_00014Z_0001 CGP 9:133761894-134068535
CIL_000150 CIL_000150_0001 CGP 9:134030305-134159968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0070577 IDA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077737 Brd3-002 protein_coding Mus_musculus 0 2767
ENSMUST00000028282 Brd3-001 protein_coding Mus_musculus 0 2700
ENSMUST00000164296 Brd3-202 protein_coding Mus_musculus 0 2612
ENSMUST00000113941 Brd3-201 protein_coding Mus_musculus 0 1788
ENSMUST00000130932 Brd3-005 processed_transcript Mus_musculus 0 1788
ENSMUST00000138693 Brd3-003 protein_coding Mus_musculus 0 1788
ENSMUST00000154316 Brd3-004 protein_coding Mus_musculus 0 1722
ENSDART00000114343 brd4-201 protein_coding Danio_rerio 0 198
ENSDART00000115117 brd4-001 protein_coding Danio_rerio 0 198

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