C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026918 Brd3 10090 - 2:27445579-27507662 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028282 Brd3-001 27445579-27475398 protein_coding
  ENSMUST00000077737 Brd3-002 27445579-27475686 protein_coding
  ENSMUST00000113941 Brd3-201 27445600-27475673 protein_coding
  ENSMUST00000126059 Brd3-007 27463999-27475181 processed_transcript
  ENSMUST00000130932 Brd3-005 27452996-27475653 processed_transcript
  ENSMUST00000138693 Brd3-003 27449269-27475654 protein_coding
  ENSMUST00000144758 Brd3-008 27463892-27464582 processed_transcript
  ENSMUST00000147736 Brd3-006 27463531-27475607 protein_coding
  ENSMUST00000154316 Brd3-004 27449269-27507662 protein_coding
  ENSMUST00000164296 Brd3-202 27447843-27464116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028282ENSMUST00000077737ENSMUST00000113941ENSMUST00000130932ENSMUST00000138693ENSMUST00000154316ENSMUST00000164296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028282 N/A N/A N/A N/A N/A N/A N/A N/A 1.015±0.03 N/A N/A N/A N/A N/A
ENSMUST00000077737 9.571±3.89 23.449±3.79 13.429±0.86 18.258±8.96 7.054±1.61 11.599±1.17 4.711±0.71 7.776±0.27 7.396±0.95 11.125±1.95 3.894±0.60 19.204±3.78 18.493±6.78 N/A
ENSMUST00000113941 1.291±0.07 N/A N/A 2.740±0.00 1.332±0.00 N/A 1.257±0.00 N/A N/A 2.062±0.03 1.059±0.40 N/A N/A 7.127±2.03
ENSMUST00000130932 N/A N/A N/A N/A 2.192±0.15 N/A N/A N/A N/A N/A N/A 3.648±0.46 N/A N/A
ENSMUST00000138693 N/A 11.819±1.50 N/A N/A 5.705±1.40 6.972±1.20 N/A N/A 3.151±0.67 N/A N/A N/A 5.015±0.74 53.850±0.00
ENSMUST00000154316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.885±7.64
ENSMUST00000164296 N/A N/A N/A 5.106±0.00 N/A N/A N/A N/A N/A N/A N/A 15.828±0.00 27.694±9.64 29.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014Z CIL_00014Z_0002 CGP 2:27262104-27507662
CIL_000150 CIL_000150_0002 CGP 2:27445579-27536535

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0070577 IEA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006527 brd3a bromodomain containing 3a protein_coding Danio_rerio
ENSG00000169925 BRD3 bromodomain containing 3 protein_coding Homo_sapiens

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